Issues
- 4
sim_ancestry with initial state can produce invalid ts when mutations exist above the roots
#2319 opened by ShyamieG - 1
chi square tests for mutation verification broken
#2316 opened by jeromekelleher - 0
Version 1.3.2 contains untested smc_k code
#2312 opened by jeromekelleher - 9
- 1
Broken pyslim link in documentation
#2305 opened by daikitag - 1
No module named kastore when following Development guide
#2302 opened by PandaGab - 1
Add Lineage/lineage_t concept
#2294 opened by jeromekelleher - 3
MacOS ARM wheels packages broken
#2285 opened by jeromekelleher - 3
Documentation for replicate_index
#2210 opened by daikitag - 6
- 3
Python 3.12 wheels
#2288 opened by fcooper8472 - 0
no `record_provenance` argument to sim_mutations
#2272 opened by petrelharp - 2
- 4
CpG mutation models
#2221 opened by hyanwong - 1
Document no pip install on Windows
#2261 opened by daikitag - 0
- 0
Update docs copyright year
#2263 opened by jeromekelleher - 1
Enable gene conversion for SMC_K model
#2280 opened by GertjanBisschop - 3
How to very quickly record marginal changes in tree height along a sequence?
#2278 opened by trevorcousins - 23
Discrepancy between expected and observed coalescence time in beta coalescent for large values of alpha
#2256 opened by Sendrowski - 1
multiallelic sites within the VCF
#2266 opened by LuisGFdez - 2
Docs versioning no longer working
#2264 opened by jeromekelleher - 6
Demography.from_demes(): ancestral population sizes and migration rates missing
#2255 opened by simonharnqvist - 2
1.3.0 Release
#2226 opened by jeromekelleher - 4
issue with replicates using "num_replicates"
#2249 opened by yzliu01 - 7
Illogical Lineage Counts in algorithms.py
#2242 opened by agushin101 - 6
- 7
Tests fail with stdpopsim 0.2.0
#2233 opened by benjeffery - 1
Update demography tests to stdpopsim 0.2
#2240 opened by GertjanBisschop - 6
TPM microsats model transition matrix error
#2237 opened by GertjanBisschop - 0
Computing likelihood for decapitated ARGs.
#2235 opened by GertjanBisschop - 5
AttributeErrors in verification.py: MsmsSweeps
#2229 opened by GertjanBisschop - 2
doi for msprime 1.0 is not correct
#2175 opened by xin-huang - 1
Island model - migration rate definition
#2223 opened by JaneeshBansal - 3
draw_pedigree documentation
#2211 opened by daikitag - 4
Example to simulate multiple bottlenecks for a population over several time points
#2213 opened by yzliu01 - 1
Inconsistencies between algorithm.c and algorithm.py
#2217 opened by YuanboSong - 1
No Sweep Model for Spatially Structured Populations
#2218 opened by YuanboSong - 2
Problem with Demography Debugger output
#2204 opened by helmutsimon - 3
recording migrants with sweep model
#2190 opened by GertjanBisschop - 1
Publish pip wheels for Windows
#2200 opened by tomwhite - 8
parent node having a time value <= to its child
#2195 opened by connor-french - 1
The error for importing msprime
#2198 opened by frezaei98 - 1
Python 3.11 wheels
#2177 opened by tomwhite - 6
problems with gsl version in pyslim 1.0.3
#2187 opened by ShyamieG - 1
Recording recombination events
#2186 opened by GertjanBisschop - 1
Autoflush edges in the simulator
#2182 opened by jeromekelleher - 1
msprime.simulate() - Generates Value error on call to `ts.as_fasta()` when Ne is set
#2184 opened by isaacovercast - 1
- 1
enable additional_nodes and coalescing_segments_only flags for DTWF and FixedPedigree
#2167 opened by GertjanBisschop