Pinned Repositories
bio_610B
Course materials for Advanced Biological Statistics II, Bio 610B, at the University of Oregon.
coaltheory
Notes on coalescent theory, ostensibly for BISC 577 (a grad class at USC).
euroibd
Code to do data processing and create figures for "The geography of recent genetic ancestry across Europe", http://arxiv.org/abs/1207.3815
ftprime_ms
landsim
efficient, forwards-time simulation of populations on raster-based landscapes
local_pca
Methods for examining PCA locally along the genome.
math578b
course material for Computational Molecular Biology
popbio
a short graduate population biology course
r-markdown-tutorial
A short tutorial on using R + markdown
templater
Some tools for writing and compiling reports in R+markdown.
petrelharp's Repositories
petrelharp/local_pca
Methods for examining PCA locally along the genome.
petrelharp/tskit_intro
Introduction to tree sequences
petrelharp/abnormal_quant_gen
petrelharp/corvallis-jan-2024
petrelharp/num_edges
petrelharp/adding-species-manuscript
manuscript materials for the adding species paper
petrelharp/berkeley-oct-2024
petrelharp/context
Context-dependent mutation rate inference machinery.
petrelharp/cornell-sep-2023
petrelharp/corvallis-feb-2024
petrelharp/daymet-single-pixel-batch
Automating the download of multiple locations for the Daymet Single Pixel Tool
petrelharp/forwards-and-backwards
petrelharp/ie2-jan-2024
petrelharp/inherits_from
petrelharp/just-the-class
A modern, highly customizable, responsive Jekyll template for course websites.
petrelharp/lineage_plotting
petrelharp/madison-sept-2018
petrelharp/msprime
A reimplementation of Hudson's classical ms simulator for modern data sets.
petrelharp/nebria
petrelharp/probgen-2022-poster
petrelharp/progen-2023
tskit poster for probgen 2023
petrelharp/pyslim
Tools for dealing with tree sequences coming to and from SLiM.
petrelharp/pyslim-feedstock
A conda-smithy repository for pyslim.
petrelharp/SLiM
Selection on Linked Mutations: A forward population genetic simulation for studying linkage effects, such as hitchhiking, background selection, and Hill-Robertson interference.
petrelharp/SLiM-Extras
Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself
petrelharp/stdpopsim
A library of standard population genetic models
petrelharp/tsdate
Infer the age of ancestral nodes in a tree sequence.
petrelharp/tskit
The tree sequence toolkit
petrelharp/tskit-site
tskit website
petrelharp/tutorials
A set of tutorials for msprime and tskit.