Pinned Repositories
analysis2
Analysis for the second consortium paper.
angsd
Program for analysing NGS data.
arg-dating-debug
coaldecoder
Demographic inference from trio coalescence rates
coaldecoder-python
corMLPE
a corStruct class for nlme, implementation of Clarke's maximum likelihood population effects model
epee
scalable expectation-propagation for the phylogenetic threshold model
r2vcftools
radish
Fast gradient-based optimization of resistance surfaces
singer-snakemake
Snakemake workflow for SINGER (ARG sampling)
nspope's Repositories
nspope/singer-snakemake
Snakemake workflow for SINGER (ARG sampling)
nspope/corMLPE
a corStruct class for nlme, implementation of Clarke's maximum likelihood population effects model
nspope/angsd
Program for analysing NGS data.
nspope/coaldecoder
Demographic inference from trio coalescence rates
nspope/coaldecoder-python
nspope/epee
scalable expectation-propagation for the phylogenetic threshold model
nspope/analysis2
Analysis for the second consortium paper.
nspope/arg-dating-debug
nspope/arg-dating-paper
Variational dating of ancestral recombination graphs
nspope/epee2
scalable expectation-propagation for the phylogenetic threshold model
nspope/eucpru-popsim-data
Auxiliary data for Eucera pruinosa genomic simulations from Pope et al
nspope/HDNGSD
tools for analysis of sequence data from mixed haplo-diploid samples
nspope/hiscott2d
Likelihood calculation for two-trait phylogenetic threshold model
nspope/locator
deep learning prediction of geographic location from individual genome sequences
nspope/ngsParalog
Copy number variation detection using NGS data.
nspope/num_edges
nspope/paternityDP
nspope/popbio
a short graduate population biology course
nspope/product-space-FEM
nspope/radishDGS
simulation for radish DGS project
nspope/relate
Software for estimating genome-wide genealogies for thousands of samples
nspope/relate_lib
C++ library containing functions for parsing/dumping Relate output files
nspope/sibship-foraging
Sibship foraging models using resistance distance
nspope/slim_magic
ipython magic for simulation using SLiM
nspope/stdpopsim
A library of standard population genetic models
nspope/stdpopsim-docs
nspope/sydneyPaternity
nspope/tsdate
Infer the age of ancestral nodes in a tree sequence.
nspope/tskit
Analyse, create and manipulate tree sequences.
nspope/tsqc
Utilities for evaluating inferred tree sequences