Pinned Repositories
african-structure-paper
analysis2
Analysis for the second consortium paper.
apragsdale.github.io
bioconda-recipes
Conda recipes for the bioconda channel.
dated-mutation-spectra
deletions
Compute the SFS in the presense of structural variants.
demography
mxb_tutorial
stdpopsim-models
utilities
apragsdale's Repositories
apragsdale/demography
apragsdale/apragsdale.github.io
apragsdale/mxb_tutorial
apragsdale/stdpopsim-models
apragsdale/utilities
apragsdale/african-structure-paper
apragsdale/analysis2
Analysis for the second consortium paper.
apragsdale/bioconda-recipes
Conda recipes for the bioconda channel.
apragsdale/dated-mutation-spectra
apragsdale/deletions
Compute the SFS in the presense of structural variants.
apragsdale/demes
Tools for describing and manipulating demographic models.
apragsdale/demes-paper
Manuscript for the demes package for demographic model specification.
apragsdale/demes-spec
Demes demographic model specification
apragsdale/Demes.jl
apragsdale/demesdraw
Drawing tools for Demes demographic models
apragsdale/fwdpy11
Forward-time simulation in Python using fwdpp
apragsdale/moments
apragsdale/msprime
A reimplementation of Hudson's classical ms simulator for modern data sets.
apragsdale/msprime-1.0-paper
Publication describing msprime 1.0
apragsdale/msprime-model-errors
A short manuscript describing some modelling errors made with msprime
apragsdale/mushi
[mu]tation [s]pectrum [h]istory [i]nference
apragsdale/neanderthal_stabilizing_selection
apragsdale/RMarkdown_manuscript_template
Template for an article written using RMarkdown
apragsdale/stdpopsim
A library of standard population genetic models
apragsdale/tracts
A set of tools for modelling ancestry patterns along the genome.
apragsdale/tskit
The tree sequence toolkit
apragsdale/tskit-ld-proto
Prototype code for 2-site stats in tskit
apragsdale/two_locus_selection
Manuscript repo for two-locus
apragsdale/variant-discovery
apragsdale/vcf_parser