tskit

There are 8 repositories under tskit topic.

tskit-dev/msprime
Simulate genealogical trees and genomic sequence data using population genetic models
Language:Python174 19 1k87
tskit-dev/tskit-rust
Rust bindings for the tskit library
Language:C15 2 1413
isinaltinkaya/vcfgl
Genotype likelihood simulator for VCF/BCF files
Language:C++8 3 41
tskit-dev/tstrait
Quantitative trait simulation for ARGs
Language:Python6 7 596
tskit-dev/tszip
Gzip-like compression for tskit tree sequences
Language:Python4 5 406
ForwardSimulation/forrustts
Forward time simulation, rust, and tree sequences.
Language:Rust3 2 640
cnr-ibba/nf-treeseq
Nextflow pipeline to convert genotype data into Tree Sequences
Language:Nextflow0 1 90
not-a-feature/pangenome-gene-transfer-simulation
Simulating and estimating the effect of gene transfer on bacterial pangenomes.
Language:Jupyter Notebook1 01