MareesAT/GWA_tutorial

Issues

• How to Create HapMap_3_r3 ( bim, bed and fam )

  #14 opened 3 years ago by Kiran936
  1

• Can you explain more about the "inversion.txt" in the 1_QC_GWAS folder

  #4 opened 5 years ago by ulysses1881826
  8

• .vcf has fewer tokens than expected error

  #5 opened 5 years ago by sererenaa
  8

• p-value threshold for HWE deviation

  #3 opened 7 years ago by blueskypie
  1

• Failed to select autosomal SNPs only (QC Step 3)

  #25 opened a year ago by Franklin593
  0

• why individual 13291 NA07045 in 0.2_low_call_rate_pihat.txt

  #23 opened 2 years ago by usernicai
  1

• Some questions about qqplots

  #24 opened 2 years ago by Isa0529
  0

• Error: 'legend' is of length 0

  #18 opened 3 years ago by Adonyo-Emmanuel
  3

• how to add the kinship matirx

  #21 opened 2 years ago by zhoudreames
  1

• I have failed convert vcf to Plink(v1.07) format

  #20 opened 3 years ago by Wusun5
  0

• ftp vs https in downloading 1000 genome vcf file in Step 2_Population_stratification

  #17 opened 3 years ago by SarojaSomu
  1

• Failed to open snp_1_22.txt

  #19 opened 3 years ago by TareqAldirawi
  0

• Permutation step, Error? or My fault?

  #16 opened 3 years ago by zzjl20
  0

• data for 0.2_low_call_rate_pihat.txt

  #13 opened 3 years ago by Manonanthini
  2

• problem solved: download site of qqman

  #15 opened 3 years ago by Clemence50421
  0

• Could you please tell me how to "inversion.txt" in the 1_QC_GWAS folder

  #9 opened 4 years ago by 8865225
  2

• Any plan to have an update to GWA_tutorial?

  #12 opened 3 years ago by Shicheng-Guo
  1

• Quantitative phenotypes QC

  #11 opened 4 years ago by elssam
  0

• Miss MDS_merge2.mds file

  #10 opened 4 years ago by Mohammad-Vahed
  1

• How to confirm which sub has the lower call rate of each pair that I should remove

  #8 opened 4 years ago by tongwang-en
  0

• The system cannot find the path specified.

  #7 opened 5 years ago by green-ear-rabbit
  0

• Setting Reference Genome

  #6 opened 5 years ago by KarthickRajaNarayanan
  0

• controlling population stratification

  #2 opened 7 years ago by blueskypie
  1

• convert vcf to plink step missing id setting

  #1 opened 7 years ago by trptyrphe11
  4