plink
There are 58 repositories under plink topic.
MareesAT/GWA_tutorial
A comprehensive tutorial about GWAS and PRS
limix/pandas-plink
PLINK reader for Python.
kostapc/Putty-Tunnel-Manager
Fixes and new release. PuTTY Tunnel Manager allows you to easily open tunnels, that are defined in a PuTTY session, from the system tray. You can also move the tunnels from PuTTY to PuTTY Tunnel Manager. This allows you to use PuTTY just for SSH shell sessions (without opening tunnels), and use PuTTY Tunnel Manager just for tunneling.
OpenMendel/SnpArrays.jl
Compressed storage for SNP data
zhanxw/seqminer
Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
ACAD-UofA/Guide-to-manipulating-PLINK-EIG-and-VCF-files
A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert between formats, merge datasets or subset by individuals in each of the formats.
QuantGen/BEDMatrix
A matrix-like wrapper around PLINK .bed files
esohkevin/gwas-tips
tips and tricks in genome-wide association studies - a tutorial
Chris1221/pRs
Toolkit for the efficient construction and analysis of polygenic risk scores in R.
ikmb/gwas-assoc
The IKMB GWAS Association Testing Pipeline
uroesch/PlinkProxy
Windows frontend for digging SSH tunnels and creating socks proxies
AJResearchGroup/plinkr
Work with PLINK from R
anilprakash94/agaat
Automated Tool for Global Screening Array analysis
kenhanscombe/plink-custom-r
Setup and starter script for the PLINK R plugin.
solelena/PSReliP
An integrated pipeline for analysis and visualization of Population Structure and Relatedness based on genome-wide genetic variant data
Vegz78/PS3FromWin
Script package to automate waking and playing your PS3 from your (remote) Windows PC
hclivess/sshauto
Automate repetitive Putty/SSH tasks, a free alternative to Ansible
milescsmith/PLINKLiftOver
Perform liftover on plink files
krassowski/jupyter-locuszoom
LocusZoom in Jupyter notebooks
CarolinaPB/population-structural-var-calling-smoove
population structural variant calling with smoove
GeneMAP-Research/genemapgwas
gwas workflow from raw intensity data to in-silico functional mapping
insilico/inbix
In Silico Bioinformatics Toolbox
jlc-christie/plink2merlin
Command Line Python Utility to convert from plink format to Abecasis Lab's QTDT format (used by Merlin).
uroesch/PlinkProxyPortable
PlinkProxy for PortableApps.com
AnstMikh/DNA
pipeline: from sra, bed, vcf to plink
Computational-Genomics-BSC/plink-bed-reader
Lightweight and memory efficient reader for PLINK BED files. It supports both SNP-major and individual-major formats. Written in pure Python.
MikeDacre/LDDirection
Get information about direction of agreement for any two lists of SNPs, based on LDlink and plink
benknoble/plink
The DSL for Dotfiles
kalilamali/FishDNA_pipeline
Step-by-step approach in the analysis of Rainbow trout DNA from raw reads to population insights using fastqc, trimmomatic, bwa, vcftools, plink, and R.
OrangePomeranian/Master_thesis
Analysis of SNPs that have the greatest impact of appearance of mammary gland tumour in dogs.
OrangePomeranian/Quantitative_Genetics
This project leverages PLINK for GWAS Quality Control, focusing on SNP analysis and PCA for ancestry insights, showcasing the vital role of bioinformatics in enhancing population genetics research.
rootstrap/ImputationGeneris
DNA Imputation tool for Generis.
svpipaliya/GWAS-scripts
Bash scripts provided here to run various GWAS QC, Imputation, PCA, and association testing steps using PLINK, SMARTPCA, RStats and Visualization