DecodeGenetics/graphtyper

Issues

• Build on AARCH64 / ARM64

  #155 opened 2 months ago by rwk-unil
  4

• Not able to handle missing sites

  #154 opened 4 months ago by Hjorvik
  1

• Genotype_sv Aggregate model has less Output SVs than Input SVs

  #152 opened 4 months ago by Lukecassar21
  1

• What does that mean？（FT=FAIL1/FAIL2/FAIL3！）

  #106 opened 3 years ago by yinmou21
  3

• During installation, an error occurred: "c++: error: unrecognized command line option ‘-mavx512bw’"

  #153 opened 4 months ago by kuangzhuoran
  1

• HLA-Genotyping: <error> Converting "HLA-A*01:01:01:01" of size 17 to int failed

  #151 opened 6 months ago by Lukecassar21
  3

• Created chopped CRAI

  #150 opened 7 months ago by nathanLauHKGI
  2

• Is it possible to call STRs with graphtyper?

  #147 opened 8 months ago by scienception
  1

• vcf_merge for SV

  #148 opened 8 months ago by JoannaTan
  1

• ( AC / NUM_MERGED_SVS ) < 25

  #149 opened 8 months ago by weizhu365
  1

• In the genotype_sv result, the `REF` filed is N, and the `ALT` filed is not a sequence.

  #146 opened 10 months ago by tanger-code
  0

• Graphtyper for calling human X-chromosome variants

  #145 opened 10 months ago by Sirtx
  0

• REF in VCF file is N

  #144 opened a year ago by pingxinxing
  0

• genotype wrong

  #141 opened a year ago by lihaicheng7003
  4

• Genotype outputs all sites

  #142 opened a year ago by lihaicheng7003
  4

• killed by the cgroup out-of-memory handler

  #140 opened a year ago by zhachengwan
  1

• Coordinates must be > 0

  #143 opened a year ago by carolinapinapaez
  1

• Reads with name=dG both have IS_FIRST_IN_PAIR=0

  #137 opened a year ago by tanger-code
  1

• why SVSIZE=number+

  #139 opened a year ago by jingydz
  2

• All BNDs have no FORMAT:FT

  #127 opened 2 years ago by tgong1
  6

• genotyping small variant error, result only contains vcf header!

  #135 opened a year ago by tanger-code
  3

• sample order in the output VCFs

  #136 opened a year ago by lindenb
  2

• Not all Svimmer INS/DEL/DUP are genotyped by grapthyper as expected

  #133 opened a year ago by jjfarrell
  2

• COVERAGE model missing for DEL causing AGGREGATED model to fail

  #108 opened 3 years ago by Lee-06
  2

• better explanation of graphtyper output VCF

  #104 opened 3 years ago by edg1983
  2

• <DEL:SVSIZE=0+:AGGREGATED>

  #103 opened 3 years ago by anxuan-web
  2

• Should there be no commas in the subsequent processing of the graphtyper output file that describes the document?

  #134 opened a year ago by jingydz
  1

• SV in input VCF missed in graphtyper output VCF

  #116 opened 2 years ago by tgong1
  2

• INFO/AAScore using graphtyper 2.7.4 is missing

  #113 opened a year ago by jjfarrell
  1

• Failing to produce calls for same samples

  #132 opened a year ago by buchanri
  0

• segment fault when genotyping sv

  #131 opened a year ago by dodudoduding
  0

• segment fault when genotyping sv

  #130 opened a year ago by dodudoduding
  0

• I do not know how to add an insertion at position

  #109 opened 3 years ago by zongzone
  2

• Genotyping of variants resulted from multi-sample Mutect2 (question)

  #129 opened a year ago by mkyriak
  0

• Graphtyper may introduce overlapped SVs in one individual

  #128 opened 2 years ago by jxcao98
  0

• call and genotype Sv with population

  #111 opened 2 years ago by zhoudreames
  1

• how to gain the sequence information

  #112 opened 2 years ago by zhoudreames
  1

• Compiling graphtyper. Problem with include(`-I`) paths when compiling. /usr/include is ignored.

  #126 opened 2 years ago by lindenb
  1

• A few errors in my bams raise a std::exit(1);, how can I modify the C++ code to skip the read(s) ?

  #125 opened 2 years ago by lindenb
  2

• All chromosomes except chromosome 1 are LowPratio on the AGGREGATED model for DEL

  #124 opened 2 years ago by YiBenqiu
  0

• use clang++ make, fatal error: redefinition of 'this_compile_arch'

  #123 opened 2 years ago by liuyong201811
  1

• LargeSVsize Filter; PASS?

  #122 opened 2 years ago by mplanasfelix
  0

• Call SVs by genome assemblies, and genotyped in WGS population

  #121 opened 2 years ago by QianghuiZhu
  0

• The genome size is too large to genotype for some genomic region properly !!!

  #107 opened 3 years ago by yinmou21
  1

• problem about source code

  #115 opened 2 years ago by HuangseYuanli
  1

• vcf_operations.cpp:525 Sample names are not unique

  #118 opened 2 years ago by xuefenfei712
  1

• When make, the following error occurs with the clang compiler on the ARM platform

  #119 opened 2 years ago by 123xyl
  1

• arm64 installtion

  #117 opened 2 years ago by xiaopangjun666
  2

• [Question] Is ARM64 a supported architecture?

  #110 opened 2 years ago by markjens
  6

• HLA Typing

  #105 opened 3 years ago by malmarri
  2