lindenb

Institut-du-Thorax, Nantes, France.

INSERMNantes, France

Pinned Repositories

cclindenb
some C/C++ code....
Language:C++22 4 215
gazoduc-nf
Nextflow Pipelines
Language:Nextflow9 2 01
jbwa
Java Bindings (JNI) for bwa
Language:Java19 9 412
jsandbox
My java Sandbox
Language:Java35 8 319
jvarkit
Java utilities for Bioinformatics
Language:Java489 28 243132
magic
file command's magic pattern file for bioinformatics
Language:Makefile20 3 21
makefile2graph
Creates a graph of dependencies from GNU-Make; Output is a graphiz-dot file or a Gexf-XML file.
Language:C626 18 2463
mod_bio
apache2 modules for bioinformatics.
Language:C18 4 03
verticalize
Simple tool to verticalize text delimited files.
Language:C36 4 73
xslt-sandbox
My xslt sandbox
Language:XSLT40 9 118

lindenb's Repositories

lindenb/makefile2graph
Creates a graph of dependencies from GNU-Make; Output is a graphiz-dot file or a Gexf-XML file.
Language:C626 18 2463
lindenb/jvarkit
Java utilities for Bioinformatics
Language:Java489 28 243132
lindenb/verticalize
Simple tool to verticalize text delimited files.
Language:C36 4 73
lindenb/jsandbox
My java Sandbox
Language:Java35 8 319
lindenb/hts-rdf
Managing sequencing data with RDF
Language:Makefile11 2 0
lindenb/rbcf
R Bindings for htslib/bcf
Language:C10 4 03
lindenb/gazoduc-nf
Nextflow Pipelines
Language:Nextflow9 2 01
lindenb/courses
Courses
Language:TeX8 5 07
lindenb/nf-htsjdk
nextflow plugin with htsjdk
Language:Java4 1 0
lindenb/htsplusplus
Select variants from VCF/BCF spaced by a distance 'd'.
Language:C++1 3 0
lindenb/nextflow
A DSL for data-driven computational pipelines
Language:Groovy1 3 0
lindenb/samtools
Fork of samtools
Language:C1 3 0
lindenb/bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
Language:C2 0
lindenb/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell3 0
lindenb/biocontainers
docker containers for bioinformatics on demand using makefiles
Language:Makefile2 0
lindenb/daily-notebook
daily notebook
Language:C3 0
lindenb/favorites
This is a page about my favorite books,foods,songs movies, etc...
2 0
lindenb/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
Language:Java3 0
lindenb/htslib
C library for high-throughput sequencing data formats
Language:C3 0
lindenb/kilda
KILDA (KIv2 Length Determined from a kmer Analysis) provides an alignment-free estimation of the number of KIV2 (Kringle IV type 2) repeats from FASTQ files.
Language:Python0 0
lindenb/microstatements
cutsom RDF statements for bioinformatics to complete larger RDF databases like MONDO
1 0
lindenb/mondo
Mondo Disease Ontology
Language:Jupyter Notebook0 0
lindenb/multi-package-containers
Testing building mulled containers for multi-requirement tools.
0 0
lindenb/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Language:JavaScript1 0
lindenb/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
Language:HTML1 0
lindenb/nfcore-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Language:Nextflow1 0
lindenb/nfcore-test-datasets
Test data to be used for automated testing with the nf-core pipelines
0 0
lindenb/quotes
RDF/XML quotes
3 0
lindenb/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Language:Nextflow1 0
lindenb/SVPV
Structural Variant Prediction Viewer
Language:Python3 0