Pinned Repositories
cclindenb
some C/C++ code....
gazoduc-nf
Nextflow Pipelines
jbwa
Java Bindings (JNI) for bwa
jsandbox
My java Sandbox
jvarkit
Java utilities for Bioinformatics
magic
file command's magic pattern file for bioinformatics
makefile2graph
Creates a graph of dependencies from GNU-Make; Output is a graphiz-dot file or a Gexf-XML file.
samtools-utilities
Utilities for Samtools ( http://samtools.sourceforge.net/ )
verticalize
Simple tool to verticalize text delimited files.
xslt-sandbox
My xslt sandbox
lindenb's Repositories
lindenb/makefile2graph
Creates a graph of dependencies from GNU-Make; Output is a graphiz-dot file or a Gexf-XML file.
lindenb/jvarkit
Java utilities for Bioinformatics
lindenb/xslt-sandbox
My xslt sandbox
lindenb/verticalize
Simple tool to verticalize text delimited files.
lindenb/jsandbox
My java Sandbox
lindenb/hts-rdf
Managing sequencing data with RDF
lindenb/gazoduc-nf
Nextflow Pipelines
lindenb/rbcf
R Bindings for htslib/bcf
lindenb/courses
Courses
lindenb/htsplusplus
Select variants from VCF/BCF spaced by a distance 'd'.
lindenb/nextflow
A DSL for data-driven computational pipelines
lindenb/samtools
Fork of samtools
lindenb/bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
lindenb/biocontainers
docker containers for bioinformatics on demand using makefiles
lindenb/broadgatk
Official code repository for GATK versions 4 and up
lindenb/crypt
editor to crypt/decrypt file
lindenb/daily-notebook
daily notebook
lindenb/delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
lindenb/favorites
This is a page about my favorite books,foods,songs movies, etc...
lindenb/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
lindenb/htslib
C library for high-throughput sequencing data formats
lindenb/microstatements
cutsom RDF statements for bioinformatics to complete larger RDF databases like MONDO
lindenb/mondo
Mondo Disease Ontology
lindenb/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
lindenb/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
lindenb/nfcore-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
lindenb/quotes
RDF/XML quotes
lindenb/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
lindenb/ScanHoxa1
ScanHoxa1
lindenb/SVPV
Structural Variant Prediction Viewer