Issues
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- 0
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API Use Cases
#84 opened by faithtyuan - 1
Error in opening LINCS L1000 .gctx file
#83 opened by songsong0425 - 1
pypi release
#81 opened by Zethson - 2
Unable to install pypi version of cmappy - no such file or directory 'pytz-2021.1.dist-info/METADATA''
#82 opened by Zethson - 0
write_gct adds in the index column
#80 opened by jnedzel - 0
Python 3.11 version
#79 opened by pauleve - 4
- 1
Cannot write back GCT file that has been parsed
#78 opened by Munchic - 2
- 0
Solving environment: failed
#74 opened by antonkratz - 1
- 3
CMap tutorial IPython notebook doesn't open
#66 opened by deniseduma - 0
Error in parsing
#70 opened by DeepColin - 1
'utf-8' codec Error when parsing gctx
#69 opened by Hoa-Lab - 0
GCTX parsing is not thread safe.
#68 opened by nborunov-integral - 3
Error during parsing
#67 opened by LeskosekRok - 0
- 1
reading gctx from a non-fs file object
#64 opened by idavydov - 0
mismatch between metadata and gctx
#62 opened by ElyasMo - 12
Following tutorial yields error
#32 opened by tstoeger - 1
can not read .gctx file
#60 opened by benanbardak - 1
- 6
parse_gctx: don't sort returned values
#36 opened by dllahr - 2
pandasGEXpress tests break for python 3
#25 opened by oena - 5
- 3
code to compute connectivity score
#39 opened by FADHLyemen - 1
- 1
Parsing GCT files fails in python3
#53 opened by saksham219 - 3
ValueError: array is too big; `arr.size * arr.dtype.itemsize` is larger than the maximum possible size.
#52 opened by FarshidShekari - 1
get row id in cmappy in gctx Files
#51 opened by FarshidShekari - 1
- 7
Convert .gctx file to .gct
#47 opened by FarshidShekari - 1
Add annotating a gct/x as a command-line tool
#40 opened by oena - 5
Exception while parsing gct files
#43 opened by Naghipourfar - 1
- 1
- 2
No module named cmap.io.gct
#38 opened by liuguangdi - 1
write_gctx TypeError in Python 3.6
#37 opened by alex-wenzel - 1
Bug for the 3.1.1 version
#35 opened by crotoc - 2
License in setup.py: Need to replace s/MIT/BSD/
#30 opened by mbargull - 2
pandasGEXpress parse fails
#23 opened by stuppie - 1
need test for main w/in slice_gct
#16 opened by dllahr - 1
need basic test coverage for pandasGEXpress.parse
#13 opened by dllahr - 1
need to convert all import statements to absolute paths
#18 opened by oena - 1
- 1
cmapPy breaks with pandas == 0.20
#9 opened by oena - 10
error in 'test_genes_queries.py'
#10 opened by FADHLyemen - 1