Pinned Repositories
23andus
BD2K Hackathon / 23andus project
blazmass_compil
Blazmass proteomic search engine with ComPIL integration for metaproteomics
faers
playing with faers data
semmed-biolink
normalization of sememd db to biolink model
strava-pics
See what your favorite ride looks like
WhatsTrafficLike
A beautiful live-updating chrome extension for traffic checking
wikibase-tools
Tools for working with a wikibase
WikidataIntegrator
A Wikidata Python module integrating the MediaWiki API and the Wikidata SPARQL endpoint
WikiDataScape
A WikiData explorer for Cytoscape
stuppie's Repositories
stuppie/wikibase-tools
Tools for working with a wikibase
stuppie/faers
playing with faers data
stuppie/semmed-biolink
normalization of sememd db to biolink model
stuppie/wikidata-sparql-query-log-analysis
wikidata-sparql-query-log-analysis
stuppie/wikidatacon_wdi_demo
Demo files for Wikidata Integrator for Wikidatacon
stuppie/TrafficTime
commute analyzer
stuppie/WikidataIntegrator
A Wikidata Python module integrating the MediaWiki API and the Wikidata SPARQL endpoint
stuppie/biolink-model
Schema and generated objects for biolink data model and upper ontology
stuppie/biothings.drugs
BioThings API for drugs.
stuppie/bw_old
stuppie/CM7_CM1E2d56col_unenr123_rawextract_2017
CM7_CM1E2d56col_unenr123_rawextract_2017
stuppie/cmapPy
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
stuppie/cq-notebooks
Notebooks for answering competency questions
stuppie/create_compil
Pipeline for creating compil database for gut microbiome metaproteomics
stuppie/ema
stuppie/Fusion_AW_20170831
Fusion_AW_20170831
stuppie/HumanDiseaseOntology
Repository for the Human Disease Ontology.
stuppie/l1ktools
mongo
stuppie/local_wikibase_bot_example
an example of setting up a local wikibase, initializing it for a bot run, and doing a bot run
stuppie/mesh-parser
simple mesh to json parser
stuppie/ncats-ingest
Management of ingestion of sources for NCATS-translator
stuppie/pmidtool
Allow you to create or retrieve a wikidata item that represents a scientific journal article given a pubmed ID
stuppie/prefixcommons-py
Prefix commons python utlities
stuppie/purl.obolibrary.org
A new system for managing OBO PURLs
stuppie/translator-knowledge-beacon
NCATS Translator Knowledge Beacon Application Programming Interface plus Sample code
stuppie/triflic
triflic analysis
stuppie/UnenrichedTriflic-BISamples
UnenrichedTriflic-BISamples May 2018
stuppie/Velos_AW_20170831
stuppie/wikidata-report
stuppie/wikidata-tools
My collection of tools for interacting with the wikidata database