ElyasMo
My main focus is on Spatial transcriptomics and analysis of different single cell modalities (e.g., scRNA-seq, snRNA-seq and scATAC-seq).
GUMEDPoland
Pinned Repositories
ACPs_HS_HSPGs_CS
Pipeline development to propose repositionable drugs which increase the functionality of anti-cancer peptides
BC_Immune.Evasion
We aimed to find the association between overexpression of MHC II and immune evasion in triple negative breast cancer when comparing to the HER2+/ER+ breast cancer sybtypes.
CRC.Treg.LOY
We aimed to find the effect of Lose Of chromosome Y (LOY) on immunosuppressive behavior of regulatory T cells in colorectal cancer
Drug.rep_BC
In this study we aimed to find repurposed drug candidates for immunotherapy of breast cancer using single cell data analysis.
phd2020
PhD Course 2020 Systems Biology of Human Metabolism and Gut Microbiome (3 ECTS)
Spatial_distirbution_gene_expression
Here I have developed a pipeline to monitor the spatial distribution of gene expression in various Seurat objects based on four different thresholds.
ST.density
R package to illustrates the spatial distribution of desired gene across spatial transcriptomics spots
ST.mtx
R package for creating Visium Seurat object without HDF5 file
ST_snRNA-seq
Human cerebral cortex - The impact of nucleus size on results from spatial transcriptomics
seurat
R toolkit for single cell genomics
ElyasMo's Repositories
ElyasMo/BC_Immune.Evasion
We aimed to find the association between overexpression of MHC II and immune evasion in triple negative breast cancer when comparing to the HER2+/ER+ breast cancer sybtypes.
ElyasMo/ST.density
R package to illustrates the spatial distribution of desired gene across spatial transcriptomics spots
ElyasMo/ST.mtx
R package for creating Visium Seurat object without HDF5 file
ElyasMo/ACPs_HS_HSPGs_CS
Pipeline development to propose repositionable drugs which increase the functionality of anti-cancer peptides
ElyasMo/Drug.rep_BC
In this study we aimed to find repurposed drug candidates for immunotherapy of breast cancer using single cell data analysis.
ElyasMo/CRC.Treg.LOY
We aimed to find the effect of Lose Of chromosome Y (LOY) on immunosuppressive behavior of regulatory T cells in colorectal cancer
ElyasMo/phd2020
PhD Course 2020 Systems Biology of Human Metabolism and Gut Microbiome (3 ECTS)
ElyasMo/Spatial_distirbution_gene_expression
Here I have developed a pipeline to monitor the spatial distribution of gene expression in various Seurat objects based on four different thresholds.
ElyasMo/ST_snRNA-seq
Human cerebral cortex - The impact of nucleus size on results from spatial transcriptomics