Pinned Repositories
2021ccmi-intro-to-gpnb
An introductory notebook to the GenePattern Notebook ecosystem
alex-wenzel.github.io
archer2018_g3_cohort_expansion
archer2018_shh_cohort_expansion
bioinfo-r-notebooks
Some notebooks for simple bioinformatics tasks in R. Mostly file conversion or nomenclature standardization.
ccal
Computational Cancer Analysis Library :crab::gun:
ccal-noir
Clone of CCAL with calls to R removed
CellFie
An alternative approach to capture the breadth of cellular functions by performing a functional analysis of existing biological networks.
ChromaSC-R
A method for testing differential gene set enrichment along pseudotime trajectories
sdcovid
A dashboard web app for summarizing San Diego region COVID-19 announcements and data
alex-wenzel's Repositories
alex-wenzel/ChromaSC-R
A method for testing differential gene set enrichment along pseudotime trajectories
alex-wenzel/sdcovid
A dashboard web app for summarizing San Diego region COVID-19 announcements and data
alex-wenzel/2021ccmi-intro-to-gpnb
An introductory notebook to the GenePattern Notebook ecosystem
alex-wenzel/alex-wenzel.github.io
alex-wenzel/archer2018_shh_cohort_expansion
alex-wenzel/ccal
Computational Cancer Analysis Library :crab::gun:
alex-wenzel/ccal-noir
Clone of CCAL with calls to R removed
alex-wenzel/CellFie
An alternative approach to capture the breadth of cellular functions by performing a functional analysis of existing biological networks.
alex-wenzel/community-connectors
This repository contains open source content for Google Data Studio.
alex-wenzel/delay-report
A python script that monitors a OneBusAway feed and reports delays
alex-wenzel/deseq2-notebook
A simple GenePattern Notebook illustrating modules and programmatic file transfers to GenePattern servers
alex-wenzel/docker-seurat
Docker container for seurat on a GenePattern Notebook
alex-wenzel/domains
Organizing and publishing the web domains of the US federal government
alex-wenzel/expanse-su-estimator
A Python script that estimates service unit (SU) charges on SDSC Expanse
alex-wenzel/gpu-nmf-benchmark
Benchmarking various implementations of non-negative matrix factorization.
alex-wenzel/GpUnit
Testing framework for GenePattern modules
alex-wenzel/gsea-py-benchmark
Code to benchmark different GSEA algorithms
alex-wenzel/GSEA_R
Revisions to the GSEA-P R Application (Subramanian and Tamayo et al 2005)
alex-wenzel/gsr-ucsd-wage-theft
A server-less, real-time calculator for computing under-appointment wage theft at UCSD.
alex-wenzel/itcr2022_workshop
alex-wenzel/Kraft.jl
:slot_machine:
alex-wenzel/match
Library for match :dancing_women:
alex-wenzel/oasis
UCSD Oasis platform
alex-wenzel/OpenOTP
alex-wenzel/pyrsche
A Dockerized, notebook-based parsing and analysis framework for auto auction data
alex-wenzel/requests
Python HTTP Requests for Humans™ ✨🍰✨
alex-wenzel/sdmts-flood-plan-maps
An index of maps for MTS flood plans.
alex-wenzel/sdtransitdelay
A twitter bot that tweets when MTS buses and trolleys are delayed. Not affiliated with MTS.
alex-wenzel/ucsd-grad-data
Repo for analysis of grad student survey data from UCSD
alex-wenzel/vcf2excel
A Python library for converting VCF files to Excel spreadsheets