melonora

altair

Declarative statistical visualization library for Python

ashlar

ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

CardiPeak

Bokeh application for visualizing and automatically analyzing calcium intensity signals over time.

CrossSpeciesIntegration

Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets

cytodata-hackathon-base

Czaki.github.io

intro-napari-slides

Introductory slideshow to napari

napari

napari: a fast, interactive, multi-dimensional image viewer for python

napari-cell-gater

A napari plugin for cell marker gating.

melonora/napari-cell-gater

A napari plugin for cell marker gating.

melonora/napari

napari: a fast, interactive, multi-dimensional image viewer for python

melonora/altair

Declarative statistical visualization library for Python

melonora/Czaki.github.io

melonora/intro-napari-slides

Introductory slideshow to napari

melonora/intro-napari-workshop

Intro to napari Workshop

melonora/linkml-arrays

Support for N-dimensional arrays in LinkML.

melonora/linkml-model

Link Modeling Language (LinkML) model

melonora/napari-spatialdata

Interactive visualization of spatial omics data

melonora/napari_docs

Documentation for napari (other than API docs)

melonora/vispy

Main repository for Vispy

melonora/linkml

Linked Open Data Modeling Language

melonora/multiscale-spatial-image

Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.

melonora/numpydantic

Type annotations for specifying, validating, and serializing arrays with arbitrary backends in Pydantic (and beyond)

melonora/ome-ld

Linked Data support for the OME Model

melonora/ome-zarr-models-py

A minimal Python package for reading OME-Zarr (meta)data

melonora/ome-zarr-py

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

melonora/spatial-image

A multi-dimensional spatial image data structure for scientific Python.

melonora/spatialdata

An open and universal framework for processing spatial omics data

melonora/spatialdata-io

melonora/spatialdata-notebooks

melonora/spatialdata-plot

Static plotting for spatialdata

melonora/spatialdata-sandbox

melonora/spatialdata-workshops

melonora/squidpy

Spatial Single Cell Analysis in Python

melonora/tensorstore

Library for reading and writing large multi-dimensional arrays.

melonora/ts-json-schema-generator

Generate JSON schema from your Typescript sources

melonora/vega-lite

A concise grammar of interactive graphics, built on Vega.

melonora/vega_schema

JSON schema for Vega and Vega-Lite

melonora/vl-convert

Utilities for converting Vega-Lite specs from the command line and Python