melonora
PhD student Saka Group Genome Biology Unit napari core dev scverse core dev
European Molecular Biology LaboratoryHeidelberg, Germany
Pinned Repositories
.github
altair
Declarative statistical visualization library for Python
anndata-plot
anndataR
AnnData interoperability in R
ashlar
ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
CardiPeak
Bokeh application for visualizing and automatically analyzing calcium intensity signals over time.
CrossSpeciesIntegration
Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets
cytodata-hackathon-base
napari
napari: a fast, interactive, multi-dimensional image viewer for python
melonora's Repositories
melonora/altair
Declarative statistical visualization library for Python
melonora/ashlar
ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
melonora/CardiPeak
Bokeh application for visualizing and automatically analyzing calcium intensity signals over time.
melonora/CrossSpeciesIntegration
Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets
melonora/cytodata-hackathon-base
melonora/Czaki.github.io
melonora/intro-napari-slides
Introductory slideshow to napari
melonora/intro-napari-workshop
Intro to napari Workshop
melonora/linkml-model
Link Modeling Language (LinkML) model
melonora/linkml-sandbox
Experimental repository for exploring a common framework for bioimaging metadata models
melonora/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
melonora/napari-ome-zarr
A napari plugin for zarr backed OME-NGFF images
melonora/napari-release-tools
Tools for speedup napari release process
melonora/pandas-profiling
Create HTML profiling reports from pandas DataFrame objects
melonora/UNETs
Applying UNET to MICS data
melonora/WBCclassification
Internship project investigating the use of synthetically generated images for classification and segmentation of single white blood cell images.
melonora/linkml
Linked Open Data Modeling Language
melonora/napari-experimental
melonora/napari-multiscale-spatial-image
A napari plugin for use with xarray multiscale spatial images.
melonora/numpydantic
Type annotations for specifying, validating, and serializing arrays with arbitrary backends in Pydantic (and beyond)
melonora/ome-ld
Linked Data support for the OME Model
melonora/ome-model
OME model (specification, code generator, implementation)
melonora/scanpy
Single-cell analysis in Python. Scales to >1M cells.
melonora/spatialdata-sandbox
melonora/spatialdata-workshops
melonora/tensorstore
Library for reading and writing large multi-dimensional arrays.
melonora/ts-json-schema-generator
Generate JSON schema from your Typescript sources
melonora/vega-lite
A concise grammar of interactive graphics, built on Vega.
melonora/vega_schema
JSON schema for Vega and Vega-Lite
melonora/vl-convert
Utilities for converting Vega-Lite specs from the command line and Python