Pinned Repositories
baysor2vpt
baysor_merfish_utils
CellSPA
Cell Segmentation Performance Assessment
Deep-Live-Cam
real time face swap and one-click video deepfake with only a single image (uncensored)
dev-setup
pakiessling's Repositories
pakiessling/baysor2vpt
pakiessling/baysor_merfish_utils
pakiessling/CellSPA
Cell Segmentation Performance Assessment
pakiessling/Deep-Live-Cam
real time face swap and one-click video deepfake with only a single image (uncensored)
pakiessling/dev-setup
pakiessling/merfish-utils
Some example scripts for handling data generated by Vizgen Merscope
pakiessling/multi-condition-comparisions
Functions for analyzing and visualizing multi-condition single-cell data (prototypes created at Cambridge hackathon)
pakiessling/single-cell-best-practices
https://www.sc-best-practices.org
pakiessling/ella_experiment
pakiessling/mousipy
Translates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.
pakiessling/nichecompass
End-to-end analysis of spatial multi-omics data
pakiessling/pertpy
Perturbation Analysis in the scverse ecosystem.
pakiessling/sopa
Technology-invariant pipeline for spatial omics analysis (Xenium / MERSCOPE / CosMx / PhenoCycler / MACSima / Hyperion) that scales to millions of cells
pakiessling/sopa_poly_experiment
pakiessling/squidpy_notebooks
Tutorials for Squidpy
pakiessling/template
Template for my bioinformatics projects
pakiessling/vpt-plugin-cellpose
Cellpose plugin for the Vizgen Post-processing Tool