Pinned Repositories
ajitjohnson.github.io
Blogging site run with jekyll
arseq
An Automated RNASeq Analysis Pipeline (Differential expression to gene enrichment)
imsig
Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
Jupyter-Notebooks
A collation of my various projects at Dana-Farber cancer institute and Harvard medical school
mcmicro
Multiple Choice Microscopy
mcmicro-nf
Nextflow prototype for mcmicro
mipy
Image Analysis Work Flow
Rscripts
A collection of R scripts used during my PhD
scimap_tutorials
Tutorial contents for using scimap.xyz
scimap
Spatial Single-Cell Analysis Toolkit
ajitjohnson's Repositories
ajitjohnson/imsig
Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
ajitjohnson/arseq
An Automated RNASeq Analysis Pipeline (Differential expression to gene enrichment)
ajitjohnson/mcmicro-nf
Nextflow prototype for mcmicro
ajitjohnson/mipy
Image Analysis Work Flow
ajitjohnson/Rscripts
A collection of R scripts used during my PhD
ajitjohnson/scimap_tutorials
Tutorial contents for using scimap.xyz
ajitjohnson/ajitjohnson.github.io
Blogging site run with jekyll
ajitjohnson/bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
ajitjohnson/Jupyter-Notebooks
A collation of my various projects at Dana-Farber cancer institute and Harvard medical school
ajitjohnson/mcmicro
Multiple Choice Microscopy
ajitjohnson/Detectron
FAIR's research platform for object detection research, implementing popular algorithms like Mask R-CNN and RetinaNet.
ajitjohnson/IMAAP
Annotation and Analysis of Multiplexed Imaging Data
ajitjohnson/ML-For-Beginners
12 weeks, 24 lessons, classic Machine Learning for all
ajitjohnson/oneliners
Useful bash one-liners for bioinformatics.
ajitjohnson/python_for_microscopists
https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1
ajitjohnson/PythonScripts
A cumulation of different project scripts
ajitjohnson/pytorch-3dunet
3D U-Net model for volumetric semantic segmentation written in pytorch
ajitjohnson/single_cell_intestine
R code for single-cell analysis of intestinal epithelial cells
ajitjohnson/uxdigi
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