ian-coccimiglio
Solving computational biology problems across different operating systems.
Rossi Lab @ UBC
Pinned Repositories
benchmark_cellpose
Benchmarking Cellpose GPU vs CPU
cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
Deep_Learning_Reproducibility
Investigating whether deep learning results are reproducible
I2K_Deep_Learning_For_Biological_Segmentation
Developing a Workflow for Biological Instance Segmentation
iconda
Lightweight GUI to create desktop icons that can manage conda/mamba environments
napari-easy-augment-batch-dl
A plugin for deep learning labeling, augmenting, training and predicting on 2d image sets. Well suited for training specialist networks using a small number of labels.
napari-segment-everything
A Napari SAM plugin to segment everything in your image (not just some things)
SAMLab
Generating label images from SAM predictions
skeletal_muscle_toolbox
Distributing macros for scientific skeletal muscle imaging in ImageJ and Fiji.
ian-coccimiglio's Repositories
ian-coccimiglio/napari-easy-augment-batch-dl
A plugin for deep learning labeling, augmenting, training and predicting on 2d image sets. Well suited for training specialist networks using a small number of labels.
ian-coccimiglio/iconda
Lightweight GUI to create desktop icons that can manage conda/mamba environments
ian-coccimiglio/I2K_Deep_Learning_For_Biological_Segmentation
Developing a Workflow for Biological Instance Segmentation
ian-coccimiglio/napari-segment-everything
A Napari SAM plugin to segment everything in your image (not just some things)
ian-coccimiglio/SAMLab
Generating label images from SAM predictions
ian-coccimiglio/skeletal_muscle_toolbox
Distributing macros for scientific skeletal muscle imaging in ImageJ and Fiji.
ian-coccimiglio/benchmark_cellpose
Benchmarking Cellpose GPU vs CPU
ian-coccimiglio/cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
ian-coccimiglio/FiberSight
A Fiji/ImageJ Based Toolset for Skeletal Muscle Bioimaging Analysis
ian-coccimiglio/human-eval-bia
Benchmarking Large Language Models for Bio-Image Analysis Code Generation
ian-coccimiglio/ian-coccimiglio
ian-coccimiglio/imagej.github.io
The ImageJ wiki
ian-coccimiglio/imsight
Curated short-form posts about biological imaging
ian-coccimiglio/instanseg
ian-coccimiglio/multilabel
A project to see whether it is reasonable to encode/decode masks as label images via prime factorization.
ian-coccimiglio/muscle_utils
ian-coccimiglio/RossiLab
ian-coccimiglio/square2023
What the Package Does (Title Case)
ian-coccimiglio/Stan_Projects
ian-coccimiglio/STAT540-UBC.github.io
Public repository of STAT540@University of British Columbia. Statistical Methods for High Dimensional Biology
ian-coccimiglio/torch_mr
GPU Memory Reporting for PyTorch in IPython
ian-coccimiglio/train_boxprompt