Pinned Repositories
AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
awesome-bio-datasets
awesome-bio-datasets
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
fastplong
Ultra-fast preprocessing and quality control for long-read sequencing data
fastv
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
gencore
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
GeneFuse
Gene fusion detection and visualization
MutScan
Detect and visualize target mutations by scanning FastQ files directly
repaq
A fast lossless FASTQ compressor with ultra-high compression ratio
scrnapip
A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis
OpenGene - Open Source Genomics Toolbox's Repositories
OpenGene/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
OpenGene/awesome-bio-datasets
awesome-bio-datasets
OpenGene/AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
OpenGene/fastplong
Ultra-fast preprocessing and quality control for long-read sequencing data
OpenGene/MutScan
Detect and visualize target mutations by scanning FastQ files directly
OpenGene/repaq
A fast lossless FASTQ compressor with ultra-high compression ratio
OpenGene/GeneFuse
Gene fusion detection and visualization
OpenGene/gencore
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
OpenGene/fastv
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
OpenGene/scrnapip
A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis
OpenGene/OpenGene.jl
(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
OpenGene/CfdnaPattern
Pattern Recognition for Cell-free DNA
OpenGene/UniqueKMER
Generate unique KMERs for every contig in a FASTA file
OpenGene/ctdna-pipeline
A simplified pipeline for ctDNA sequencing data analysis
OpenGene/VisualMSI
Detect and visualize microsatellite instability(MSI) from NGS data
OpenGene/defq
Please switch to https://github.com/OpenGene/defastq
OpenGene/MrBam
Query Mutated Reads from a Bam
OpenGene/FusionDirect.jl
(No maintenance) Detect gene fusion directly from raw fastq files
OpenGene/SeqMaker.jl
(No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated
OpenGene/dedup
Deduplication for cfDNA sequencing data
OpenGene/defastq
Ultra-fast Multi-threaded FASTQ Demultiplexing
OpenGene/pecheck
check paired-end FASTQ data integrity
OpenGene/slicer
Slice a text file (like FastQ) to smaller files by lines, with gzip supported
OpenGene/ACMSI
The shiny-based app for Fragment Analysis, especially for MSI analysis
OpenGene/novelbio-base
OpenGene/novelbio-bioinfo
OpenGene/IRDProc
Process genomic data downloaded from influenza research database for unique k-mer generating