OpenGene/fastp

Issues

• How can I reproduce the results of trimmomatic in fastp?

  #570 opened 5 months ago by jeong2624
  2

• invalid gzip output when output is empty

  #524 opened a year ago by sstrong99
  1

• Deduplication issue: failure of one round deduplication + accuracy level issue. [fastp v0.23.4]

  #580 opened 3 months ago by nightkid03
  0

• Disable "too many N" filter

  #579 opened 3 months ago by matthdsm
  0

• Different minimum lengths for the forward and reverse reads during filtering

  #578 opened 3 months ago by MariamFahmy
  0

• Adapter sequences not removed from short SE data

  #577 opened 3 months ago by MafGal
  0

• Fastp does not remove G homopolymers

  #576 opened 3 months ago by Homap
  0

• Output read lengths are affected by duplicate --adapter_sequence arguments

  #575 opened 3 months ago by mwhamgenomics
  0

• fastp not removing all Illumina universal adapter sequences as indicated by FastQC

  #558 opened 8 months ago by luckyvivi
  5

• What are the default settings?

  #574 opened 3 months ago by jiangzy26
  0

• Ability to use FASTA files as input

  #573 opened 5 months ago by vkkodali
  0

• Feature Request: UMI Join

  #529 opened a year ago by trahsemaj
  1

• trimming adapters at the beginning of the read and IUPAC nucleotide codes

  #572 opened 5 months ago by hrehrauer
  0

• Not reproducible

  #562 opened 7 months ago by jnmaloof
  7

• Use with fifo?

  #571 opened 5 months ago by GregTD42
  3

• Running fastp in quiet mode.

  #563 opened 7 months ago by otradnaya
  2

• interleaved output is not reproducible with multiple threads

  #552 opened 9 months ago by briankegerreis
  2

• Feature request: output file listing the IDs of duplicate reads and associated "representative reads"

  #569 opened 6 months ago by charlesfoster
  1

• Discrepency in filtering restults and reads after filtering

  #528 opened a year ago by xapple
  3

• ERROR: '+' expected

  #565 opened 7 months ago by spw6422
  5

• not support arm?

  #561 opened 7 months ago by YWYONE
  1

• typo in "forogt" -> "forgot"

  #567 opened 6 months ago by SchwarzMarek
  1

• How can I generate images of the same size as the insert fragment individually

  #568 opened 6 months ago by Missthepast
  0

• Does fastp remove primer sequences for aplicon sequencing results?

  #532 opened a year ago by timz0605
  1

• Feature request: remove reads with poly_X tails and polyX in general

  #566 opened 7 months ago by roni-fultheim
  0

• Error is raised for problematic rows

  #560 opened 7 months ago by TomerAntman
  3

• Nanopore data filtering using fastp

  #555 opened 9 months ago by emilydolivo97
  1

• Feature Request: fastp operation on input and output directories

  #564 opened 7 months ago by SuhasSrinivasan
  0

• few options throw 'undefined error' -reg

  #559 opened 8 months ago by parima678
  0

• No adapter detected for read and Q20 bases: 4747174600(99.9999%)

  #557 opened 8 months ago by h20gg702
  0

• Not able to install on Mac book M1

  #553 opened 9 months ago by ranijames
  4

• Keep occurred error message from the beginning < igzip: invalid gzip header found >

  #554 opened 9 months ago by teddy-han
  0

• Split interleaved output

  #551 opened 9 months ago by Poshi
  0

• Insert size estimation and report interpretation

  #536 opened a year ago by lmartinezgili
  2

• Store duplicate reads

  #549 opened 10 months ago by johnw2358
  0

• Interpretation help file?

  #548 opened 10 months ago by jullee
  0

• Missing most reads after given r2 adapter

  #547 opened 10 months ago by Flying-Doggy
  1

• Building a fastp binary on Apple Silicon

  #523 opened a year ago by rayhendricks
  1

• Feature request: add option to set lower limit of unqualified quality

  #543 opened a year ago by ybendana
  0

• Can fastq remove read sequences with duplicate IDs?

  #542 opened a year ago
  0

• No mouse ouver in kmer matrix

  #541 opened a year ago by SilasK
  0

• Very short fragments

  #540 opened a year ago by SilasK
  0

• Can fastp draw PNG format?

  #539 opened a year ago
  0

• aborted core dumped

  #538 opened a year ago by ramnageena11
  0

• fastp in my pip package

  #537 opened a year ago by theAguy
  0

• I obtained different 'insert size peaks' when I used different options for the same paired-end sequencing sample.

  #535 opened a year ago by Eunyoung-Oh114
  0

• ERROR: '+' expected

  #534 opened a year ago by wangsanshui1028
  1

• Adapter indels

  #531 opened a year ago by korjent
  0

• Is `Read1 before filtering` field in the report filtered at all or is it the raw read count per mate?

  #530 opened a year ago by ilykos
  1

• Hi guys, this feature is revised and improved a lot in fastp v0.19.9 (will be released soon), see the update here:

  #526 opened a year ago by jrostudent
  0