Pinned Repositories
alvajames.github.io
bamtools
C++ API & command-line toolkit for working with BAM data
Big-data_analysis
The following set of codes were used to process the RNA-seq, exon-seq and whole genome seq datasets on the HPC cluster. The following scripts were used for three different projects during my Phd.
bio-ner
Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the-art models.
CWL-PH
cwl-workflow
CWL reproducible workflow for computing hypoxia score for RNA-seq expression data
CWLtool-pipeline-development
Data_analysis
The python snippets for manipulation of big data on a daily basis
Data_overlap
Data_science_projects
ranijames's Repositories
ranijames/alvajames.github.io
ranijames/bamtools
C++ API & command-line toolkit for working with BAM data
ranijames/Big-data_analysis
The following set of codes were used to process the RNA-seq, exon-seq and whole genome seq datasets on the HPC cluster. The following scripts were used for three different projects during my Phd.
ranijames/bio-ner
Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the-art models.
ranijames/CWL-PH
ranijames/cwl-workflow
CWL reproducible workflow for computing hypoxia score for RNA-seq expression data
ranijames/CWLtool-pipeline-development
ranijames/Data_analysis
The python snippets for manipulation of big data on a daily basis
ranijames/Data_overlap
ranijames/Data_science_projects
ranijames/Hypoxia
ranijames/joint-snv-mix
Automatically exported from code.google.com/p/joint-snv-mix
ranijames/joint-snv-mix.release
Automatically exported from code.google.com/p/joint-snv-mix.release
ranijames/lnc_func_deep
lncRNAs functional preictions
ranijames/lncrscan
Automatically exported from code.google.com/p/lncrscan
ranijames/lncscan
ranijames/Notebooks
Ipythonnotebooks
ranijames/Perl-for-Bioinformatics
An attempt to help anyone interested in using Perl for Bioinformatics
ranijames/ranijames
Config files for my GitHub profile.
ranijames/RNA
ranijames/Sensitivity_test
ranijames/snakemake_rnaseq
A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)
ranijames/User_Features_TA
Test for finding the customers with high chance of buying a product using Logistic Regression
ranijames/variationtoolkit
Automatically exported from code.google.com/p/variationtoolkit
ranijames/wgs-structvar
Whole Genome Sequenceing Structural Variation Pipelines
ranijames/workflow_snakemake
ranijames/workflows
Community maintained workflows & tools (with examples)