Pinned Repositories
microViz
R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
reference_database_creator
creating reference databases for amplicon sequencing
rhdf5
Package providing an interface between HDF5 and R
hdf5r
phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
patchwork
The Composer of ggplots
intro-to-github
timz0605
vsearch
Versatile open-source tool for microbiome analysis
vegan
R package for community ecologists: popular ordination methods, ecological null models & diversity analysis