david-barnett/microViz

Issues

• comp_barplot with OTU/ASV?

  #181 opened 12 days ago by lxsteiner
  1

• Composition barplot sorting by 1 taxon

  #174 opened 4 months ago by magibc
  4

• Tax fix with a minimum length of zero still removes/replaces empty strings

  #97 opened 2 years ago by david-barnett
  0

• The `tax_filter` argument `min_sample_abundance` does not recognise proportions

  #128 opened 3 months ago by hkaspersen
  3

• Change levels for LM modeling in tax_tree

  #175 opened 3 months ago by scilexenko
  1

• Use scores to get ordination scores: summary.cca will fail in the next vegan release

  #176 opened 3 months ago by david-barnett
  0

• ps_filter by group?

  #170 opened 5 months ago by antoine4ucsd
  1

• Better error message for UniFrac distances? - issue #53

  #168 opened 6 months ago by alejandrocs98
  2

• comp_barplot reduce/remove space between axes and bars

  #166 opened 6 months ago by greboul
  1

• Use of custom transofmration in linear models.

  #160 opened 7 months ago by SilasK
  1

• phylogenetic tree disappeared after tax_transform() step

  #143 opened 7 months ago by Leran10
  2

• Cannot build PCoA plot using ord_plot

  #140 opened 7 months ago by LauGuaUuu
  2

• Taxa cannot be aggregated at rank: Genus

  #145 opened 7 months ago by bylam
  2

• cor_heatmap taxon_renamer or alternative option for labeling rows

  #146 opened 7 months ago by AngelicaMiraples
  3

• comp_barplot seem to have issues with domain being unknown

  #147 opened 7 months ago by NeginValizadegan
  2

• tax.fix(), and "Problematic Genus values detected in tax_table"

  #150 opened 7 months ago by Nekovirus
  3

• Can I make a correlation heatmap between taxa and categorical variable?

  #161 opened 7 months ago by timz0605
  1

• dominant taxa in each sample

  #141 opened 7 months ago by momodiame21
  2

• Tax_fix no non-unknown values

  #153 opened 7 months ago by luigallucci
  1

• Labelling samples in ord_plot PCoA

  #155 opened 7 months ago by we32i225
  1

• [FR] Add sankey/alluvial plots to visualize abundances

  #152 opened 8 months ago by camilogarciabotero
  2

• Strange behaviour when using comp_barplot with facet_grid

  #149 opened 8 months ago by DanaBlu
  2

• Error in access(object, "otu_table", errorIfNULL) : otu_table slot is empty.

  #148 opened 9 months ago by chrstraub
  2

• Annotated heatmaps - error in sample_anno

  #144 opened 9 months ago by gaworj
  4

• how can i order my samples and show their names?

  #139 opened a year ago by we32i225
  3

• Logical variable becomes numeric when plotting CCA

  #137 opened a year ago by hkaspersen
  2

• comp_barplot of raw abundances

  #131 opened a year ago by moyn413
  2

• Correlation heat map issue assigning taxonomic rank

  #130 opened a year ago by jspychalla
  5

• interactive site inactive

  #129 opened a year ago by skose82
  2

• Adding p values to cor_heatmap

  #126 opened a year ago by mradz19
  1

• Example ordination plot workflow could be improved/simplified - currently shows 10% prevalence filtering of genera before CLR transform on families..

  #112 opened a year ago by david-barnett
  1

• some GUSTAME site links have changed

  #132 opened a year ago by david-barnett
  1

• Documentation for taxatrees

  #127 opened a year ago by hkaspersen
  1

• error in taxatree_stats_p_adjust when using grouping = c("rank","term")

  #119 opened a year ago by SilasK
  1

• Support for TreeSummarizedExperiment?

  #117 opened a year ago by antagomir
  2

• Sample Names for Heatmaps

  #115 opened 2 years ago by Drob84761
  1

• let tax_select actually use a list for tax list

  #100 opened 2 years ago by david-barnett
  1

• Error: if (any(test_matrix < 1 & test_matrix != 0)) {: missing value where TRUE/FALSE needed

  #109 opened 2 years ago by david-barnett
  1

• mixed effect in dist_permanova

  #106 opened 2 years ago by jorondo1
  0

• Subsetting aitchison distance

  #105 opened 2 years ago by jorondo1
  0

• Output from taxatree_models not matching corncob::differentialTest()

  #104 opened 2 years ago by wilhelmsjoland
  0

• No change in #/Taxa when trying tax_select?

  #102 opened 2 years ago by david-barnett
  5

• tax_select using a list for input?

  #99 opened 2 years ago by carmennns2
  2

• Calculating gunifrac on the fly in ord_explore gives no indication that it is working

  #98 opened 2 years ago by david-barnett
  0

• shao19 example data family rank contains orders

  #92 opened 2 years ago by david-barnett
  1

• Interactive plot and it turns to black

  #94 opened 2 years ago by dabinj
  0

• example of tax_mutate for regex-based pre-cleaning of tax_table before tax_fix

  #93 opened 2 years ago by david-barnett
  0

• Links broken in Readme.md on github.com only

  #87 opened 2 years ago by davised
  1

• taxatree_plotkey emits dplyr dataframe warnings, originating from taxatree_plot_labelsQuadrant

  #80 opened 2 years ago by david-barnett
  1

• dist_seriate

  #82 opened 2 years ago by david-barnett
  0