Pinned Repositories
action-get-latest-tag
✨ GitHub Action to get a latest Git tag
ARIBA_analysis
R script for analysis of ARIBA report files
bacass
Simple bacterial assembly and annotation pipeline
bash_scripts
BioinfTraining
Repository for bioinformatics training at the Norwegian Veterinary Institute
Delicious
Share your recipes - version control your recipes. I suspect most of the practical version control will be focused on cakes. But other recipes are welcome, particularly if they are excellent and take almost no time to prepare. Share your tips and tricks! We like efficiency. You can also add conversion, cooking time estimators scripts if you want … You are also most welcome to use this repository as a training tool to learn git.
funtools
misc-scripts
Miscellaneous small scripts
RaukR-2018-Notes
Notes and data from RaukR Course 2018
VAMPIR
Tool for analysing reports for Antimicrobial resistance and virulence genes, plasmid types and multilocus sequence typing data
hkaspersen's Repositories
hkaspersen/misc-scripts
Miscellaneous small scripts
hkaspersen/funtools
hkaspersen/RaukR-2018-Notes
Notes and data from RaukR Course 2018
hkaspersen/VAMPIR
Tool for analysing reports for Antimicrobial resistance and virulence genes, plasmid types and multilocus sequence typing data
hkaspersen/action-get-latest-tag
✨ GitHub Action to get a latest Git tag
hkaspersen/ARIBA_analysis
R script for analysis of ARIBA report files
hkaspersen/bacass
Simple bacterial assembly and annotation pipeline
hkaspersen/bash_scripts
hkaspersen/BioinfTraining
Repository for bioinformatics training at the Norwegian Veterinary Institute
hkaspersen/Delicious
Share your recipes - version control your recipes. I suspect most of the practical version control will be focused on cakes. But other recipes are welcome, particularly if they are excellent and take almost no time to prepare. Share your tips and tricks! We like efficiency. You can also add conversion, cooking time estimators scripts if you want … You are also most welcome to use this repository as a training tool to learn git.
hkaspersen/distanceR
R package for calculating distances from cgMLST allele data and annotating dendrograms
hkaspersen/Ellipsis
hkaspersen/fastqc_analysis
R script for analysis of fastqc reports
hkaspersen/gyrA_mut_analysis
R script for mutation analysis of E. coli gyrA gene with .fasta files
hkaspersen/hkaspersen_thesis
Repository for PhD Thesis of Håkon Kaspersen
hkaspersen/impoRt
R package for importing data from multiple files and folders
hkaspersen/iteRate
hkaspersen/KG-VET_Quantification
hkaspersen/nf-gwas-pipeline
A Nextflow Genome-Wide Association Study (GWAS) Pipeline
hkaspersen/nvi-documentation
Tutorial page for NVI
hkaspersen/organizational
Repo with useful inof
hkaspersen/PD-project
R Project for analysis of pancreas disease in fish in Norway
hkaspersen/qm_wgs_4species
hkaspersen/qrec_wgs1
hkaspersen/Quast_reporting
R Script for reporting quast results on assemblies
hkaspersen/taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
hkaspersen/vampfunc
hkaspersen/vetmic2018
Code accompanying Kaspersen et al. 2018 article in Veterinary Microbiology