vegandevs/vegan

Issues

• Unable to successfully perform Permanova analysis using the latest version 2.6-8

  #693 opened a month ago by jieyin2023
  0

• Problem with diversity in vegan package

  #692 opened a month ago by Fra170197
  3

• is it possible to set two factors as strata?

  #688 opened 2 months ago by Biofarmer
  0

• Do order of RDA axes correspond to explained variance of explanatory variables?

  #686 opened 2 months ago by aguilart
  0

• CRAN breaking monitor

  #647 opened 5 months ago by jarioksa
  0

• betadisper calculate distance between samples and the centroid of a different group.

  #606 opened a year ago by joshgsmith
  8

• Regression in ordiplot(<rda-class>, scaling=1)

  #685 opened 2 months ago by jarioksa
  9

• Add a message that prints during fitting if terms are aliased

  #682 opened 2 months ago by gavinsimpson
  9

• Consider changing the default to `by = NULL` or `by = "margin"` in `adonis2()`

  #677 opened 2 months ago by gavinsimpson
  2

• Suggestion : Add functions for PCA and CA that just call `rda()` and `cca()` in the background

  #655 opened 4 months ago by cmartin
  18

• pairwise PERMDISP no F values

  #679 opened 2 months ago by bark9299
  3

• Adding `pca` and `ca` (wish of #655) breaks two packages in reverse dependencies tests

  #664 opened 4 months ago by jarioksa
  8

• Error with ordistep(dbrda) vegan package

  #670 opened 3 months ago by ParideBalzani
  3

• Absolute counts or relative abundance for BC distance matrix

  #672 opened 3 months ago by MonicaSteffi
  0

• Someone knows if decostand renormalizes the data after the translation with the pseudocounts?

  #668 opened 4 months ago by fabih1996
  2

• CLR: na.rm is not working

  #661 opened 5 months ago by TuomasBorman
  4

• technical question using envfit with ordinate phyloseq function!

  #665 opened 4 months ago by cabraham03
  0

• Related to #655 should the wrappers allow partial unconstrained ordination via formula and `Condition()`?

  #662 opened 4 months ago by gavinsimpson
  4

• vegdist() in disagreement with designdist()

  #660 opened 5 months ago by aloboa
  2

• cex vegan::ordiplot not respected by plot.(d)c(c)a

  #656 opened 5 months ago by BertvanderVeen
  1

• Running rarecurve() crashes vscode in querying par()

  #654 opened 5 months ago by maartenciers
  8

• Protection error in do_wcentre

  #653 opened 5 months ago by jarioksa
  2

• Permanova (vegan::adonis2) with two factors but one factor is significant for vegan::betadisper

  #649 opened 5 months ago by freixas84
  0

• Extracting coefficients

  #640 opened 6 months ago by momsane
  2

• vegan release candidate breaks isopam

  #643 opened 6 months ago by jarioksa
  1

• likely error in CLR formula in decostand docs

  #621 opened 8 months ago by handibles
  5

• Error from vegan::cca after updating to R 4.4: "crossprod" is not a BUILTIN function

  #642 opened 6 months ago by sjgordon1
  0

• Scaling of Canonical Coefficients in prc() using pyrifos data set

  #602 opened 6 months ago by Hansam
  3

• Misleading summary in capscale (db-RDA)?

  #636 opened 6 months ago by fvlampe
  4

• Interpretation of species vectors in nMDS

  #638 opened 6 months ago by friendly
  1

• Function 'nullmodel' does not recognize most methods anymore

  #618 opened 7 months ago by fmassol
  1

• dbrda function does not let pseudocount through

  #631 opened 7 months ago by TuomasBorman
  3

• Vegan for webR / wasm

  #623 opened 7 months ago by isbool
  26

• Functions `ordirgl` and `ordiplot3d` no longer seem to be in the package

  #620 opened 7 months ago by aghaynes
  3

• Please see issue #631

  #635 opened 7 months ago by jarioksa
  0

• Why does PROTEST report high significance when PROCRUSTES residuals are high?

  #630 opened 7 months ago by NJOram
  0

• Which dissimilarity index to use

  #607 opened 8 months ago by fabib1209
  0

• vif.cca Error in qr.X(Q)

  #622 opened 8 months ago by powerfulDie
  0

• Identifying significance for each level of a factor with envfit

  #625 opened 8 months ago by hkaspersen
  0

• Random effects / dbrda with unifrac distances ?

  #626 opened 8 months ago by ladrub
  1

• "betadisper" _Negative values_ add=lingoes

  #624 opened 8 months ago by QianxinJiang
  8

• Accessing NMDS points in metaMDS class object, with associated site names!

  #616 opened 9 months ago by gabrieltedone
  1

• CCA/RDA row name order matters

  #615 opened 10 months ago by DeaconOfBiology
  2

• Need help for understand the "alias" variables

  #612 opened a year ago by eggxo
  0

• envfit question

  #611 opened a year ago by jspychalla
  1

• Error in if (R2.adds[best] > R2.previous && (!R2scope || R2scope && R2.adds[best] <= : missing value where TRUE/FALSE needed

  #610 opened a year ago by eggxo
  4

• Error message using vegan and "shannon" index

  #608 opened a year ago by Willowtree72
  6

• Trying to write a short loop using 'd' function to estimate qD for q = 0,1 and 2

  #609 opened a year ago by Willowtree72
  2

• vegan::vegist and vegan::metaMDS don't produce equivalent results

  #605 opened a year ago by befriendabacterium
  7

• Clarification of strata argument for adoinis2

  #603 opened a year ago by cazzlewazzle89
  0