Unable to successfully perform Permanova analysis using the latest version 2.6-8
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jieyin2023 commented
Dear author,
I don't know why the output of the same code after updating Vegan is different. The new version of Vegan cannot output the impact of each treatments on community structure. only
here is my code: permanova_results <- adonis2(formula = bray.dist ~ Experiment+ Soil +Genotype+Sample_type, data = merged_pc)
The results of the old version is shown in the left figure, and the output of the new version is shown in the right figure. It is very important to me, please tell me why.