Gaius-Augustus/Augustus

Issues

• OrthosDB version in scripts/compleasm_to_hints.py

  #426 opened 14 days ago by Abieskawa
  1

• getAnnoFasta.pl fails to create output from .gff

  #424 opened a month ago by Jdbeck66
  3

• new version forthcoming?

  #425 opened a month ago by douglasgscofield
  0

• What is the meaning of the score in the 6th column in the output?

  #423 opened a month ago by laurahum
  1

• Could not install from source

  #422 opened 2 months ago by tallnuttrbgv
  0

• One CDS exon does not begin properly after the previous CDS exon

  #421 opened 3 months ago by Niohuruzh
  0

• gff2gbSmallDNA.pl error

  #406 opened 10 months ago by francicco
  2

• Empty genbank produced by gff2gbSmallDNA.pl

  #419 opened 4 months ago by katharinedickson
  1

• The meaning of the six column in the Augustus gff3 output file and the meaning of --minexonitronprobe parameter

  #418 opened 4 months ago by shiyi-pan
  1

• properly message errors stemming from truncated parameter files

  #413 opened 6 months ago by MarioStanke
  1

• In MAKER, using augustus' species model reports an error

  #416 opened 5 months ago by rongrongy
  1

• Format error during training of closely related species

  #417 opened 5 months ago by zhanghongbin01
  0

• Unable to locate command line parameters file

  #412 opened 6 months ago by katieemelianova
  3

• etraining error when using --CRF=1 parameter

  #411 opened 6 months ago by shiyi-pan
  0

• Segmentation fault error

  #407 opened 9 months ago by lilinzhou
  3

• undefined reference to `BamTools::BamReader::Open(std::string const&)'

  #410 opened 7 months ago by QianChwnLyn
  0

• Inquiry About Gene Models Not Starting with 'M'

  #409 opened 7 months ago by caixu0518
  1

• setting seed for randomSplit.pl

  #408 opened 8 months ago by fanhuan
  1

• --softmasking_off

  #405 opened 10 months ago by TCHeaven
  0

• The probability of alternative transcript

  #404 opened 10 months ago by dudududu12138
  0

• Gene Prediction Challenges and Strategies for Phytophthora meadii

  #401 opened a year ago by mathavanpu
  2

• Error Installing using Docker

  #403 opened a year ago by AnnaFire
  0

• Newer translation tables; tables with no dedicated stops

  #402 opened a year ago by Artoria2e5
  0

• Mus musculus

  #390 opened a year ago by isnmn
  1

• install error

  #399 opened a year ago by bsb2014
  3

• Error:../include/types.hh:16:43: fatal error: boost/archive/text_oarchive.hpp: No such file or directory

  #387 opened 2 years ago by isunshine-cc
  2

• Each time the city runs out of money "Caesar puh" should incur -1 favor penalty per 1000 Dn

  #398 opened a year ago by akdev
  2

• Augustus CGP mode, terminate called after throwing an instance of 'std::out_of_range'

  #394 opened a year ago by Nikhilgunala
  13

• mysql compilation error

  #396 opened a year ago by francicco
  5

• gtf2gff.pl transcript name problem

  #393 opened 2 years ago by KatharinaHoff
  0

• Who can explain extrinsic.M.RM.E.W.cfg column 2-4 in [GENERAL] section

  #388 opened 2 years ago by xiekunwhy
  1

• Matter: getAnnoFasta.pl extract CDS

  #389 opened 2 years ago by yexianingyue
  1

• Create hints using ONT data.

  #386 opened 2 years ago by eprdz
  2

• Using error about AUGUSTUS (3.5.0)

  #383 opened 2 years ago by cfz1998
  1

• Compilation broken due to bam2wig

  #382 opened 2 years ago by avianalter
  0

• Enforce maximum intron length?

  #380 opened 2 years ago by gjerman
  0

• Segmentation fault error using filter bam

  #376 opened 2 years ago by El-Castor
  1

• Low accuracy on Tetrahymena thermophila

  #379 opened 2 years ago by MarioStanke
  0

• Is there a protocol for "adjust metarpars" after WebAUGUSTUS has problems with accuracy?

  #377 opened 2 years ago by SchwarzEM
  1

• Protocol to configure AUGUSTUS to predict genes in genomes with different isochore regions?

  #378 opened 2 years ago by SchwarzEM
  1

• image missing in docs/readme.rnaseq.html

  #375 opened 2 years ago by hmehlan
  1

• Bogus shebang

  #368 opened 2 years ago by yurivict
  1

• etraining CRF segmentation fault

  #370 opened 2 years ago by KatharinaHoff
  6

• warning: result of comparison of constant -1 with expression of type 'FeatureType' is always true

  #367 opened 2 years ago by yurivict
  0

• The 'install' target doesn't work when stage directory is necessary

  #366 opened 2 years ago by yurivict
  0

• /usr/bin/ld: cannot find -lhts

  #365 opened 2 years ago by ypchan
  1

• undefined reference to `SSL_clear@OPENSSL_3.0.0'

  #364 opened 2 years ago by ypchan
  0

• Using prothint output in augustus

  #362 opened 2 years ago by ShakunthalaNatarajan
  1

• New release

  #361 opened 2 years ago by bernt-matthias
  1

• Augustus in Braker encountered problems

  #360 opened 2 years ago by 17863952296
  0