Pinned Repositories
GALBA
GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.
Bioinf_pract_lecture
Lecture materials for the course "Bioinformatisches Praktikum" at University of Greifswald
BRAKER-TSEBRA-Workshop
This repository contains course materials for a workshop on structural genome annotation with BRAKER and TSEBRA
GALBA-data
Repository that describes and contains data used for the manuscript on GALBA
GenomeAnnotation_Workshop
Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV
International_Summerschool_for_Proteomics_2024
Statistics & R Materials
PythonCompact
Python compact course (preparatory for more advanced courses)
StatisticsPython
Statistics with Python
teaching
This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
KatharinaHoff's Repositories
KatharinaHoff/GenomeAnnotation_Workshop
Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV
KatharinaHoff/BRAKER-TSEBRA-Workshop
This repository contains course materials for a workshop on structural genome annotation with BRAKER and TSEBRA
KatharinaHoff/StatisticsPython
Statistics with Python
KatharinaHoff/GALBA-data
Repository that describes and contains data used for the manuscript on GALBA
KatharinaHoff/International_Summerschool_for_Proteomics_2024
Statistics & R Materials
KatharinaHoff/PythonCompact
Python compact course (preparatory for more advanced courses)
KatharinaHoff/teaching
This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
KatharinaHoff/Bioinf_pract_lecture
Lecture materials for the course "Bioinformatisches Praktikum" at University of Greifswald
KatharinaHoff/braker-snake
Simple snakemake workflows for handling BRAKER on large data sets
KatharinaHoff/compleasm
A genome completeness evaluation tool based on miniprot
KatharinaHoff/EviAnn_release
This is the standalone version of the EviAnn pipeline
KatharinaHoff/GeneMark-ETP
GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology
KatharinaHoff/Liftoff
An accurate GFF3/GTF lift over pipeline
KatharinaHoff/metaeuk
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
KatharinaHoff/OMArk
KatharinaHoff/PhyloKernel
Mathematica code for PhyloNetReductions
KatharinaHoff/pyprog
An introductory Python course for people with programming experience
KatharinaHoff/pyzero
KatharinaHoff/Reconstruct-Parser
Parser for Reconstruct XML files of electron microscopy images with marked contours
KatharinaHoff/StatistikIBilder
Bilder zu den JupyterNotebooks von Statistik I
KatharinaHoff/Klebsiella_protein_analysis
Documentation and software for analysis of lipoproteins in Klebsiella pneumoniae