Gaius-Augustus/GALBA
GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.
PerlNOASSERTION
Issues
- 0
The number of genes that exceed normal
#53 opened by fishman311 - 2
Transcript ID is not unique
#51 opened by xo2003 - 8
In transcript g86.t1 two UTR/CDS features are overlapping. Not allowed by definition. at ~/software/Augustus/scripts/gtf2gff.pl line 182, <STDIN> line 759036.
#38 opened by wangjie07070910 - 3
Is this correct output?
#48 opened by y-yoshioka1109 - 2
- 2
Key ERROR in [filter_gtf_by_txid.err]
#49 opened by Marison-1 - 2
Intall
#47 opened by zhangyixing3 - 4
Error regarding pygustus in singularity run
#46 opened by stat-lab - 1
- 2
failed to execute: /usr/bin//etraining
#45 opened by jyw-atgithub - 4
pygustus_hints.err
#41 opened by linshengnan09 - 4
gbFilterEtraining.stderr error
#42 opened by gushiro - 3
- 4
warning: Coverage appears to be high, --ignoreCoverage flag will be ignored
#35 opened by alexvasilikop - 7
- 3
galba.gtf not created
#37 opened by kullrich - 4
failed to execute miniprothint.py
#31 opened by COMInterop - 6
Pygustus type error
#32 opened by SamCT - 2
gbFilterEtraining error
#33 opened by marcelauliano - 5
Long runtime for 3 Gb genome
#34 opened by ASLeonard - 0
Change working directory?
#36 opened by kushalsuryamohan - 6
Segmentation fault
#30 opened by aabaricalla - 5
Run GALBA with external miniprot run
#8 opened by CongLiu37 - 5
Training file does not contain any training genes
#29 opened by mabh5 - 2
Protein.fa files
#28 opened by zhoudreames - 5
Error during miniprothint stage
#20 opened by ASLeonard - 2
Use Existing not working
#22 opened by aabaricalla - 8
Pygustus in the Singularity
#11 opened by Phismil - 0
- 2
pygustus error
#10 opened by CongLiu37 - 1