alexvasilikop
Bioinformatician - Genomics Core Leuven (UZ Leuven)
Genomics Core Leuven (UZ Leuven)Leuven
Pinned Repositories
bio-playground
miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
ChromGenomePlot
A tool for analysis and visualization of various genomic features along the chromosomes of reference genome assemblies
fasta2tree
A simple computational workflow for inferring phylogenetic trees from a set of unaligned fasta files
Genome_assembly_statistics
A simple python script to infer basic contiguity stats from a genome assembly fasta file
MARCIE
Mapping, variant calling and genotyping pipeline using paired-end Illumina short reads
Orthograph
Orthology prediction using a graph-based, reciprocal approach with profile hidden Markov models
Perl_scripts
Various perl scripts for various bioinformatic purposes
Rotifer_phylogeny
rotifer phylogeny scripts
sambamba
Tools for working with SAM/BAM data
bcftools
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
alexvasilikop's Repositories
alexvasilikop/ChromGenomePlot
A tool for analysis and visualization of various genomic features along the chromosomes of reference genome assemblies
alexvasilikop/bio-playground
miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
alexvasilikop/fasta2tree
A simple computational workflow for inferring phylogenetic trees from a set of unaligned fasta files
alexvasilikop/Genome_assembly_statistics
A simple python script to infer basic contiguity stats from a genome assembly fasta file
alexvasilikop/MARCIE
Mapping, variant calling and genotyping pipeline using paired-end Illumina short reads
alexvasilikop/Orthograph
Orthology prediction using a graph-based, reciprocal approach with profile hidden Markov models
alexvasilikop/Perl_scripts
Various perl scripts for various bioinformatic purposes
alexvasilikop/Rotifer_phylogeny
rotifer phylogeny scripts