Pinned Repositories
scNovel
GALBA
GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several closely related species are available.
CACIMAR
cross-species analysis of cell identities, markers and regulations
splam
✂️ Deep learning-based splice site predictor that improves spliced alignments
genomeannotator
Pipeline for the identification of (coding) gene structures in draft genomes.
liana
LIANA: a LIgand-receptor ANalysis frAmework
bamtools
C++ API & command-line toolkit for working with BAM data
EvalSVcallers
Evaluate the performances (precision and recall) of structural variation (SV) callers
MOPline
Detection and genotyping of structural variants
TRsv
Detection tandem repeat variations (TR-CNVs) and structural variations (SVs) using long reads
stat-lab's Repositories
stat-lab/EvalSVcallers
Evaluate the performances (precision and recall) of structural variation (SV) callers
stat-lab/MOPline
Detection and genotyping of structural variants
stat-lab/TRsv
Detection tandem repeat variations (TR-CNVs) and structural variations (SVs) using long reads
stat-lab/bamtools
C++ API & command-line toolkit for working with BAM data