KatharinaHoff

KatharinaHoff's Stars

• ComparativeGenomicsToolkit/cactus

  Official home of genome aligner based upon notion of Cactus graphs

  Language:C52922876111

• Gaius-Augustus/BRAKER

  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

  Language:Perl3682381981

• Gaius-Augustus/Augustus

  Genome annotation with AUGUSTUS

  Language:C++29018282110

• Kinggerm/GetOrganelle

  Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)

  Language:Python2801125254

• ekg/alignment-and-variant-calling-tutorial

  basic walk-throughs for alignment and variant calling from NGS sequencing data

  21024164

• Linus2punkt0/bluesky-crossposter

  An app for crossposting your posts from bluesky to twitter and mastodon

  Language:Python16952228

• conchoecia/odp

  oxford dot plots

  Language:Python13868110

• frederikkemarin/BEND

  Benchmarking DNA Language Models on Biologically Meaningful Tasks

  Language:Python9752313

• rjchallis/assembly-stats

  Assembly statistic visualisation

  Language:JavaScript8851985

• rhysnewell/aviary

  A hybrid assembly and MAG recovery pipeline (and more!)

  Language:Python85512113

• lfaino/LoReAn

  Long Reads Annotation pipeline

  Language:Python7184610

• DessimozLab/OMArk

  Language:Python646207

• gatech-genemark/ProtHint

  Protein hint generation pipeline for gene finding in eukaryotic genomes

  Language:Python5745213

• rdz-oss/BattyBirdNET-Pi

  A realtime acoustic bat & bird classification system for the Raspberry Pi 4/5 built on BattyBirdNET-Analyzer.

  Language:PHP408222

• Gaius-Augustus/MakeHub

  Fully automated generation of UCSC assembly hubs

  Language:Python34484

• Novartis/easyTrackHubs

  This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of a UCSC Track Hub ready to be visualized in the genome browser. For details about it's use, please have a look at the vignette of the package.

  Language:HTML2850

• eswlab/orphan-prediction

  methods for orphan gene prediction paper optimization

  Language:Shell256611

• gatech-genemark/GeneMark-ETP

  GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology

  Language:AMPL205163

• gatech-genemark/MetaGeneMark-2

  MetaGeneMark-2: Improved Gene Prediction in Metagenomes

  Language:AMPL185133

• alekseyzimin/EviAnn_release

  This is the standalone version of the EviAnn pipeline

  Language:M416271

• Jstacs/Jstacs

  Language:Java162624

• Finn-Lab/plastiC

  A Snakemake workflow for recovery of plastid genomes from metagenomic samples

  Language:Python10300

• Gaius-Augustus/VARUS

  RNA-Seq sampling

  Language:C++8472

• TonyBolger/HelixerPost

  Language:Rust8342

• DataCompetency/PythonAdvanced

  Language:Jupyter Notebook4200