lfaino/LoReAn

Issues

• 404 while downloading Augustus software and RepeatMasker software

  #48 opened a year ago by levcovenant
  1

• Problem of the result of LoReAn

  #47 opened a year ago by LiantingFu
  1

• LoReAn fails at braker in real dataset

  #46 opened 3 years ago by brennanhyden
  0

• Running LoReAn via docker failed

  #45 opened 3 years ago by LarsGab
  1

• Error when running test data Crispa

  #41 opened 4 years ago by lazlostrange
  1

• LoReAn is need use too big memory

  #44 opened 4 years ago by xiaosefengyun
  2

• RUNNING iASSEMBLER failed

  #43 opened 4 years ago by simoncchu
  5

• running time of LoReAn

  #42 opened 4 years ago by simoncchu
  1

• getRightStrand.py, IndexError: list index out of range

  #40 opened 4 years ago by codeatcg
  0

• proteinAlign.py, unsupported operand type(s) for -: 'str' and 'int'

  #39 opened 4 years ago by codeatcg
  0

• unauthorized (docker pull lfaino/lorean:latest)

  #38 opened 4 years ago by codeatcg
  1

• Long reads error (IndexError: list index out of range)

  #37 opened 4 years ago by sajjadasaf
  0

• salmon: error while loading shared libraries: liblzma.so.0

  #36 opened 4 years ago by jiali0411
  1

• Error in getRightStrand.py

  #35 opened 4 years ago by stroehleina
  3

• maker error

  #34 opened 4 years ago by sajjadasaf
  0

• REPEATMASKER TO MASK THE GENOME# ERROR

  #33 opened 4 years ago by sajjadasaf
  0

• Improvements: short reads

  #32 opened 5 years ago by nlapalu
  1

• Problem (write permission) for braker

  #31 opened 5 years ago by nlapalu
  4

• Dockerfile should version pin third party software and retrieve them from upstream instead of using COPY

  #21 opened 5 years ago by eburgueno
  1

• std::bad_alloc error due to excessive memory use by diamond v0.9.26.127 with larger protein data set

  #30 opened 5 years ago by stroehleina
  2

• The created annotation are not correlating to mRNAseq data.

  #23 opened 5 years ago by max-biodatomics
  8

• Lorean installation error

  #27 opened 5 years ago by ConcettaDe4
  30

• libopenblas.so.0 cannot open shared object file

  #28 opened 5 years ago by melop
  12

• Problems installing LoReAn

  #13 opened 5 years ago by csijcs
  8

• work_dir option doesn't permit clean IO control

  #24 opened 5 years ago by nhartwic
  5

• --long_reads error

  #25 opened 5 years ago by ricardo-aaron
  7

• Raising ValueError when running LoReAn_example

  #29 opened 5 years ago by Yujiaxin419
  3

• mask gff error: list index out of range

  #11 opened 5 years ago by iwangtoknow
  9

• errors during the run of Augustus

  #26 opened 5 years ago by michieitel
  43

• issue with interproscan module

  #22 opened 5 years ago by max-biodatomics
  3

• Unable to pull docker image lfaino/lorean:latest. Image is far too big

  #19 opened 6 years ago by eburgueno
  5

• Missing runtime container listed in `INSTALL.md`

  #18 opened 6 years ago by eburgueno
  2

• prepareEvmInputs.py, NameError

  #17 opened 6 years ago by zcrself
  19

• raise ValueError("No lines parsed -- was an empty file provided?") ValueError: No lines parsed -- was an empty file provided?

  #16 opened 6 years ago by ncgrjsmiao
  76

• STAR runtime

  #15 opened 6 years ago by ctxchris
  3

• singularity download ERROR

  #12 opened 6 years ago by YuntaoTan
  3

• minimal intron length default

  #14 opened 6 years ago by maleasy
  4

• Non-docker installation possible?

  #8 opened 6 years ago by yo54233154
  4

• new dirsAndFiles.py error

  #10 opened 6 years ago by iwangtoknow
  5

• Run time

  #4 opened 6 years ago by abayega
  3

• Multiple adapter

  #6 opened 6 years ago by palfalvi
  5

• Dictionary error.

  #9 opened 6 years ago by iwangtoknow
  21

• Minimal contig limitation?

  #7 opened 7 years ago by iwangtoknow
  6

• annotation update failed, PASA error.

  #5 opened 7 years ago by iwangtoknow
  6

• CRISPR test data fails

  #3 opened 7 years ago by danwiththeplan
  7

• Clarify -u option

  #2 opened 7 years ago by danwiththeplan
  2