Pinned Repositories
addinit
Initialize an 'RStudio' Project
AGAT
Another Gff Analysis Toolkit
AlignGraph
Algorithm for secondary de novo genome assembly guided by closely related references
AnnoSINE
SINE annotation tool for plant genomes
assembly-annotation-pipeline
Plant genome assembly and annotation pipeline using snakemake
awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
Azteca-Tococa
bioinformatics-coffee-hour
Short lessons from FAS Informatics coffee hour
bubble_plot
Visualize linear and non-linear connections between numerical/categorical features (2D histogram with bubbles)
cgview_comparison_tool
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
sajjadasaf's Repositories
sajjadasaf/AnnoSINE
SINE annotation tool for plant genomes
sajjadasaf/assembly-annotation-pipeline
Plant genome assembly and annotation pipeline using snakemake
sajjadasaf/awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
sajjadasaf/cgview_comparison_tool
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
sajjadasaf/CSR3-genome
sajjadasaf/clinker
Gene cluster comparison figure generator
sajjadasaf/EasyMicrobiomeR
Using R language in microbiome analysis
sajjadasaf/GBKviz
Easy-to-use web application for visualization and comparison of genomes in Genbank file
sajjadasaf/GenoVi
GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
sajjadasaf/ggpubr
'ggplot2' Based Publication Ready Plots
sajjadasaf/HGTector
HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
sajjadasaf/IRplus
Intelligent Inverted Repeat scoping tool
sajjadasaf/jasp-desktop
JASP aims to be a complete statistical package for both Bayesian and Frequentist statistical methods, that is easy to use and familiar to users of SPSS
sajjadasaf/kalign
A fast multiple sequence alignment program.
sajjadasaf/MitoFinder
MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
sajjadasaf/MitoZ
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
sajjadasaf/Nanopore-Workflow
Working pipeline for nanopore + illumina data
sajjadasaf/NOVOPlasty
NOVOPlasty - The organelle assembler and heteroplasmy caller
sajjadasaf/novowrap
Assembly chloroplast genome and validate conformation
sajjadasaf/Plant_Annotation_TEs
Methods and recipes for Plant Genome Annotation - Transposable Elements
sajjadasaf/PlantGenomeAnnotation
sajjadasaf/plot_genome_align_fig
Plot genome alignment figure using progressiveMauve & genoPlotR
sajjadasaf/plotsr
Tool to plot synteny and structural rearrangements between genomes
sajjadasaf/pyCircos
python Circos
sajjadasaf/pyGenomeViz
A genome visualization python package for comparative genomics
sajjadasaf/RagTag
Tools for fast and flexible genome assembly scaffolding and improvement
sajjadasaf/sajjadasaf
sajjadasaf/sra-tools
SRA Tools
sajjadasaf/SYNY
The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
sajjadasaf/WGAVarHunter
Fast and accurate genetic variation identification through whole genome alignment