Gaius-Augustus/BRAKER
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
PerlNOASSERTION
Pinned issues
Issues
- 2
- 2
error in genemark
#900 opened by qfh20m20m - 0
Error when running test1.sh
#899 opened by KatherineNH - 0
Error while running MakeHub
#898 opened by ASUQ - 4
Using conda to install BRAKER3
#897 opened by jiangxiuhan0310 - 2
gene interval is short than CDS interval
#896 opened by leon945945 - 2
- 1
error :get_gc_content.py
#893 opened by cpouchon - 1
- 0
Properties::getProperty(): cannot convert value "#" of key "/Constant/opalprob" into double.
#895 opened by Z-rose7 - 3
(GeneMark-ET) Error in 'make_nt_freq_mat.pl'
#890 opened by shin0727 - 1
Questions regarding tsebra
#879 opened by bauerlev - 0
Few genes annotated with RNASeq BRAKER3
#894 opened by bijendrabio - 0
- 2
- 3
How to apply the species models to another species
#891 opened by Eden-yike - 1
can't find compleasm_to_hints.py
#889 opened by SolayMane - 1
- 0
Does anyone try to apply InGenAnnot adding UTR function after Braker annotation
#886 opened by Abieskawa - 15
- 3
Issues about the codes provided in paper navigating eukaryotic genome annotation pipeline
#883 opened by Abieskawa - 3
503: SyntaxWarning: invalid escape sequence '\.'
#884 opened by Georicl - 8
Error while running BRAKER3
#880 opened by InesGaLu - 1
Provide stringtie output directly to braker3
#870 opened by allind - 1
- 4
- 0
GeneMark error on the names in the genome file
#877 opened by pelotbdr - 8
Failed to execute: /opt/Augustus/bin//etraining Could not locate command line parameters file:
#874 opened by tallnuttrbgv - 10
Using Iso-seq data for Braker annotation
#863 opened by Upendra19993 - 0
[GeneMark-ES.stderr] uninitialized value $name in concatenation (.) or string at gmes_petap.pl
#875 opened by wym0072003 - 3
Error with Singularity image
#869 opened by lucaskbobadilla - 1
- 0
regarding softmasking
#872 opened by vbhardwaj3010 - 0
BRAKER gft score
#871 opened by vbhardwaj3010 - 0
Hisat mapping
#868 opened by aureliendejode - 2
- 0
How can I specify the number of CPU cores to use when running AUGUSTUS for ab initio gene prediction?
#866 opened by Vijithkumar2020 - 1
can't download long reads singularity image
#855 opened by sqwwww - 2
Failed to execute: /opt/Augustus/bin//augustus ExonModel: Couldn't open file *_exon_probs.pbl
#852 opened by kwiyounghan - 6
Braker 1 and Braker 2
#858 opened by RacheliHadjez - 0
Failed to execute: tsebra.py
#864 opened by GLking123 - 3
- 1
Does BRAKER3 support the annotation of chromosomes larger than 2 million base pairs?
#862 opened by octpalacios - 1
error, output file is empty data/ep.gff
#861 opened by gladjabo - 2
Very comprehensive assessment!
#860 opened by ZhangPY-bioinformatics - 5
Can not find file: genome_gmst.gtf.
#857 opened by sunnycqcn - 1
Failed to execute /usr/bin//etraining
#856 opened by gladjabo - 4
Reproducibility issue
#853 opened by JBerthelier - 2
Missing information about Solanum lycopersicum RNAseq used in Braker3 paper?
#854 opened by JBerthelier - 1
GeneMark-ETP didn't receive enough evidence from the input data, in this case
#851 opened by xuyinnnan