Pinned Repositories
alienindex
blastannotate
genome assembly & annotation helpers
EukDetect
FungalPopgenSMGC
Scripts and workflows for identifying intraspecific variants in secondary metabolic gene clusters in fungi
gutprotist-search
search for gut protists without genomes in short read metagenomics data
materialshell
A material design theme for your terminal. ✨
useful_pace_scripts
Useful stuff to get started on the cluster
BRAKER
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
Zoonomia
Scripts used in the analysis of the 241-mammal Zoonomia dataset for the upcoming publication: "Evolutionary constraint and innovation across hundreds of placental mammals"
allind's Repositories
allind/EukDetect
allind/FungalPopgenSMGC
Scripts and workflows for identifying intraspecific variants in secondary metabolic gene clusters in fungi
allind/alienindex
allind/blastannotate
genome assembly & annotation helpers
allind/gutprotist-search
search for gut protists without genomes in short read metagenomics data
allind/materialshell
A material design theme for your terminal. ✨
allind/useful_pace_scripts
Useful stuff to get started on the cluster