leekgroup/recount

Issues

• package ‘recount’ is not available for Bioconductor version '3.19'

  #25 opened 7 months ago by twobeers75
  5

• expressed_regions() is not working with the new IDIES and AWS bigWig file locations

  #23 opened 2 years ago by lcolladotor
  5

• [BUG] Severe Slowdown due to rowRanges 'symbol' column in RSE datasets

  #22 opened 3 years ago by millerh1
  2

• Results for TCGA samples having all "NA" values

  #21 opened 3 years ago by boseb
  1

• Search by GSE

  #11 opened 4 years ago by assaron
  5

• Helper function for loading multiple rse files

  #15 opened 4 years ago by lcolladotor
  1

• Download rse for a tissue from GTEx/TCGA

  #16 opened 5 years ago by lcolladotor
  1

• How to get annotation for exon?

  #17 opened 5 years ago by ahdee
  1

• NA's in rse_tx_brain

  #18 opened 5 years ago by sonali-bioc
  3

• rse_gene/rse_exon have too many counts by several orders of magnitude?

  #20 opened 5 years ago by ceiabreu
  1

• inconsistent pheno tables between gene and transcript datasets

  #19 opened 5 years ago by jvanheld
  1

• Remove package installation code

  #14 opened 6 years ago by LiNk-NY
  3

• Is additional normalization needed when compare counts between two different projects, like TCGA and GTEx?

  #13 opened 6 years ago by xiaodongpang23
  1

• BiocFileCache integration

  #12 opened 7 years ago by PeteHaitch
  2

• Plot base level coverage

  #9 opened 7 years ago by lcolladotor
  9

• column names of colData of RangedSummarizedExperiment inconsistent?

  #10 opened 8 years ago by mbernste
  3

• TCGA metadata issue in column age_at_initial_pathologic_diagnosis

  #8 opened 8 years ago by lcolladotor
  2

• POU5F1 and genes on more than one chromosome are currently not in recount

  #6 opened 8 years ago by lcolladotor
  1

• snaptron_query NA coercion error

  #5 opened 8 years ago by jpling
  3

• Transcript level matrix for thousands of experiments

  #7 opened 8 years ago by lcolladotor
  1

• Unable to access data set to reproduce analysis

  #3 opened 8 years ago by ishaanpbs
  1

• Issue downloading the recount package with my version of R

  #2 opened 8 years ago by julclu
  2

• needs to import stuff from `SummarizedExperiment`?

  #1 opened 9 years ago by andrewejaffe
  1