Pinned Repositories
BioC2017_TCGA_GTEx_BOF
This repository contains a brief outline for a 'Birds-of-Feather' (BOF) session to meet and discuss analyzing publicly available cancer data from TCGA & GTEx
BRAINUMAP
GermanosProstatescRNASeq
GSC_scRNASeq_KAT5paper
Lim-5utr-Paper
This repository contains code for our 5' utr mutation analysis paper
Pattwelletal2020
This repository contains R scripts used for our publication "A kinase-deficient NTRK2 splice variant predominates in glioma and amplifies several oncogenic signaling pathways"
UncertaintyRNA
This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used RNA-seq pipelines"
sonali-bioc's Repositories
sonali-bioc/UncertaintyRNA
This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used RNA-seq pipelines"
sonali-bioc/BioC2017_TCGA_GTEx_BOF
This repository contains a brief outline for a 'Birds-of-Feather' (BOF) session to meet and discuss analyzing publicly available cancer data from TCGA & GTEx
sonali-bioc/GermanosProstatescRNASeq
sonali-bioc/GSC_scRNASeq_KAT5paper
sonali-bioc/Lim-5utr-Paper
This repository contains code for our 5' utr mutation analysis paper
sonali-bioc/Pattwelletal2020
This repository contains R scripts used for our publication "A kinase-deficient NTRK2 splice variant predominates in glioma and amplifies several oncogenic signaling pathways"
sonali-bioc/BRAINUMAP
sonali-bioc/3UTRMutationalMPRA
sonali-bioc/AnalyzeRiboSeqData
sonali-bioc/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
sonali-bioc/BioC2015Introduction
Introduction to R and Bioconductor session at BioC2015 July 20-22, Seattle, Wa
sonali-bioc/Bioconductor20YearsSlides
Carousel of xaringan slides to celebrate 20 years of the Bioconductor project.
sonali-bioc/BiocUtils
sonali-bioc/Cut-and-Run
sonali-bioc/datasciencecoursera
sonali-bioc/datasharing
The Leek group guide to data sharing
sonali-bioc/ExData_Plotting1
Plotting Assignment 1 for Exploratory Data Analysis
sonali-bioc/GettingCleaningData
This repository contains an assignment for the coursera course Getting And Cleaning Data
sonali-bioc/JanaARID1ABladderCancer
This repository contains code for our upcoming paper "Dissecting the interface between ARID1A and mRNA translation in bladder cancer" from the [Hsieh Lab](https://research.fredhutch.org/hsieh/en.html) at Fred Hutch Cancer Center.
sonali-bioc/labs
Scripts for PH525x: Data Analysis for Genomics
sonali-bioc/MedulloEPNLandscape
sonali-bioc/MLSeqAnalysis
Sequence Analysis using Machine Learning Algorithms
sonali-bioc/Palantir
Single cell trajectory detection
sonali-bioc/Pattwell_transcript_sci-RNA-seq3
sonali-bioc/RepData_PeerAssessment1
Peer Assessment 1 for Reproducible Research
sonali-bioc/sonaliRepo
sonali-bioc/SzulzewskyVGLL4Paper
This repository contains R scripts for the latest paper on YAP1 activity and VGLL4 in aggressive NF2 mutant meningiomas published in Neuro Oncology Advances. https://academic.oup.com/noa/advance-article/doi/10.1093/noajnl/vdae148/7740511
sonali-bioc/SzulzewskyYap1Maml2Paper