rnaseq
There are 247 repositories under rnaseq topic.
COMBINE-lab/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
galaxyproject/training-material
A collection of Galaxy-related training material
sdparekh/zUMIs
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
mikelove/bioc-refcard
Bioconductor cheat sheet
getzlab/rnaseqc
Fast, efficient RNA-Seq metrics for quality control and process optimization
thelovelab/tximport
Transcript quantification import for modular pipelines
GuyTeichman/RNAlysis
Analyze your RNA sequencing data without writing a single line of code
helicalAI/helical
This repository contains the python package for Helical
nextflow-io/rnaseq-nf
A proof of concept of RNAseq pipeline
genome/bfx-workshop
A course on genomics and bioinformatics from WU
earmingol/cell2cell
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
SciLifeLab/NGI-RNAseq
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
Russel88/DAtest
Compare different differential abundance and expression methods
patidarr/ngs_pipeline
Exome/Capture/RNASeq Pipeline Implementation using snakemake
lcolladotor/derfinder
Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches
leekgroup/recount
R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
nf-core/rnavar
gatk4 RNA variant calling pipeline
aristoteleo/Scribe-py
Regulatory networks with Direct Information in python
cantinilab/scPRINT
single cell foundation model for Gene network inference and more
greenelab/RNAseq_titration_results
Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
yyoshiaki/VIRTUS
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
nextflow-io/rnatoy
A proof of concept RNA-Seq pipeline with Nextflow
qbic-pipelines/rnadeseq
Differential gene expression analysis and pathway analysis of RNAseq data
amarinderthind/RNA-seq-tutorial-for-gene-differential-expression-analysis
This RNAseq data analysis tutorial is created for educational purpose
LieberInstitute/recount3
Explore and download data from the recount3 project
Novartis/pisces
PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.
chanzuckerberg/ExpressionMatrix2
Software for exploration of gene expression data from single-cell RNA sequencing.
ncbi/pm4ngs
Project Manager for NGS data analysis
thelovelab/fishpond
Differential expression and allelic analysis, nonparametric statistics
ICBI/viGEN
viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
jmw86069/splicejam
Sashimi plots for RNA-seq data using detected transcripts
mikelove/alpine
Modeling and correcting fragment sequence bias for RNA-seq
BIMSBbioinfo/pigx
Pipelines in genomics
nf-core/scflow
Please consider using/contributing to https://github.com/nf-core/scdownstream
crazyhottommy/pyflow-RNAseq
RNAseq pipeline based on snakemake
sunyumail93/PipeRNAseq
A comprehensive pipeline for RNAseq data analysis