lcolladotor/derfinder

Issues

• [Help required] setting cutoff

  #46 opened a year ago by Dalhte
  0

• BiocParallel errors when running regionMat()

  #45 opened a year ago by rosshandler
  1

• Coverage matrix for regions

  #44 opened a year ago by Prakrithi-P
  1

• Need help with makeModels() testvar error

  #41 opened 5 years ago by fruce-ki
  7

• Question about the need for species and chromosome style

  #40 opened 7 years ago by fruce-ki
  2

• namespace issues re: `tibble`?

  #39 opened 8 years ago by andrewejaffe
  1

• filterData not providing feedback

  #38 opened 8 years ago by fomightez
  3

• create a UCSC Track Hub from derfinder results

  #31 opened 8 years ago by andrewejaffe
  3

• doesn't load on R 3.3

  #37 opened 8 years ago by andrewejaffe
  3

• `targetSize` and `totalMapped` should be required inputs for `regionMatrix`

  #36 opened 8 years ago by andrewejaffe
  0

• Add a way to set advanced options

  #34 opened 8 years ago by lcolladotor
  1

• Please see issue

  #35 opened 8 years ago by LiNk-NY
  1

• How Fstats are generated in analyzeChr()

  #33 opened 10 years ago by MonicaVara
  1

• Speed up p-value calculation

  #29 opened 10 years ago by lcolladotor
  4

• Width of devtools::session_info()

  #28 opened 10 years ago by lcolladotor
  1

• Problem with fullCoverage function

  #32 opened 10 years ago by PietaSchofield
  3

• Can latest `derfinder` reproduce original (2013) analysis?

  #30 opened 10 years ago by brianhigh
  1

• Improve doc: filterData() after fullCoverage()

  #27 opened 10 years ago by lcolladotor
  0

• add bigwig support?

  #18 opened 11 years ago by andrewejaffe
  1

• Missing derfinderPlot dependency

  #25 opened 10 years ago by lcolladotor
  1

• filterData(cutoff = 0) fails in v0.0.69

  #26 opened 10 years ago by lcolladotor
  0

• Adopt GenomeInfoDb

  #20 opened 11 years ago by lcolladotor
  0

• plotCluster() broken with ggbio 1.12.0

  #21 opened 11 years ago by lcolladotor
  0

• Warnings when using coverageToExon()

  #19 opened 11 years ago by lcolladotor
  0

• handle strand-specific alignments?

  #16 opened 11 years ago by alyssafrazee
  2

• error in calculatePvalues() when fstats.output is NULL

  #9 opened 11 years ago by lcolladotor
  1

• error in calculatePvalues() when fstats.output appears to be a list

  #10 opened 11 years ago by lcolladotor
  1

• extra installation steps required

  #13 opened 11 years ago by alyssafrazee
  3

• plotCluster() example fails due to a ggbio::autoplot() error

  #7 opened 11 years ago by lcolladotor
  1

• plotCluster() not working on R 3.0.2

  #1 opened 11 years ago by lcolladotor
  2

• bumphunter as import

  #3 opened 11 years ago by mikelove
  4

• rename "foldChange" => "log2FoldChange" for the column in the output regions

  #4 opened 11 years ago by mikelove
  2