mikelove
Genetics & Biostatistics at UNC-Chapel Hill. R/Bioconductor developer
UNC-Chapel HillChapel Hill, NC
Pinned Repositories
awesome-multi-omics
List of software packages for multi-omics analysis
bioc-refcard
Bioconductor cheat sheet
preNivolumabOnNivolumab
EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
r-gotchas
R gotchas
zinbwave-deseq2
Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
DESeq2
Differential expression of RNA-seq data using the Negative Binomial
rnaseqDTU
RNA-seq workflow: differential transcript usage
rnaseqGene
RNA-seq workflow: exploratory analysis and differential expression
tximeta
Transcript quantification import with automatic metadata detection
tximport
Transcript quantification import for modular pipelines
mikelove's Repositories
mikelove/awesome-multi-omics
List of software packages for multi-omics analysis
mikelove/bioc-refcard
Bioconductor cheat sheet
mikelove/preNivolumabOnNivolumab
EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
mikelove/alpine
Modeling and correcting fragment sequence bias for RNA-seq
mikelove/mrlocus
Older repo for MRLocus. See new website for software usage guide:
mikelove/plyrangesTximetaCaseStudy
A case study for the combination of plyranges and tximeta Bioconductor packages
mikelove/ase-sim
mikelove/mikelove.github.io
Love Lab website
mikelove/plyrangesMLmisc
miscellaneous ideas of plyranges implementations or extensions
mikelove/test_pydeseq2
mikelove/igvf_spdi_demo
mikelove/larsson-2021
mikelove/osteoblast-quant
mikelove/PyDESeq2
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
mikelove/s4demo
Minimal demo of a simple S4 method and class setup
mikelove/ads2020
Advanced Data Science 2020 Edition
mikelove/BioC2023
mikelove/bioconductor.org
Website for bioconductor.org
mikelove/boot-basics
mikelove/cd4-overlaps
mikelove/checkfiles
mikelove/mpra
mikelove/pkgrevdocs
Training Material for Community Reviewers
mikelove/plotgardener
mikelove/plyranges
A grammar of genomic data transformation
mikelove/shiny_demo_igvf
R/Shiny demo accessing data via IGVF Catalog API
mikelove/stageR
stageR package
mikelove/swish-ase-assessment
mikelove/tidybulk
Brings bulk and pseudobulk transcriptomics to the tidyverse
mikelove/tidySummarizedExperiment
Brings SummarizedExperiment to the tidyverse