derfinder
There are 16 repositories under derfinder topic.
lcolladotor/derfinder
Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches
leekgroup/recount
R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
LieberInstitute/recount3
Explore and download data from the recount3 project
leekgroup/regionReport
Generate HTML report for a set of genomic regions or DESeq2/edgeR results
LieberInstitute/recountWorkshop2020
BioC2020 workshop: Human RNA-seq data from recount2 and related packages
LieberInstitute/recountWorkflow
Public repo for the recount Bioconductor workflow that is visible at http://bioconductor.org/help/workflows/
dzhang32/ER_paper_2020_supp_code
Supplementary code for the paper: Incomplete annotation has a disproportionate impact on our understanding of Mendelian and complex neurogenetic disorders
leekgroup/derfinderPlot
Plotting functions for derfinder results
dzhang32/ODER
Optimising the Definitions of Expressed Regions
LieberInstitute/recountWorkshop
Package for the recount workshop for BioC2017
leekgroup/derfinderData
Example data used by the derfinder and derfinderData Bioconductor packages
leekgroup/derfinderHelper
Helper package for derfinder
LieberInstitute/dbFinder
dbFinder code
LieberInstitute/GenomicState
Build and access GenomicState objects for use with derfinder tools from sources like Gencode
LieberInstitute/recountWorkshop2019
Workshop proposal for BioC2019 centered around the recount2 resource