Pinned Repositories
animated_matplotlib_classic-binder
Notebook to demonstrate animated plots with Matplotlib in classic Jupyter notebook interface & NbClassic served via MyBinder system.
blast-binder
Repo for running command line-based BLAST in Jupyter environment provided via Binder.
methods_in_yeast_genetics
a collection of Jupyter notebooks for doing calculations related to Methods in Yeast Genetics book
mini-pipelines
collection of scripts that chain together other scripts by preparing and processing/transforming data.
sequencework
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
structurework
programs and scripts for molecular structure analysis
yeastmine
using YeastMine (populated by SGD and powered by InterMine) to mine yeast Saccharomyces cerevisiae genetics data
fomightez's Repositories
fomightez/sequencework
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
fomightez/structurework
programs and scripts for molecular structure analysis
fomightez/animated_matplotlib_classic-binder
Notebook to demonstrate animated plots with Matplotlib in classic Jupyter notebook interface & NbClassic served via MyBinder system.
fomightez/pdbepisa-binder
Using data from PDBePISA with the convenience of Python and Jupyter.
fomightez/3Dscatter_plot-binder
3D scatter plot examples via Binder
fomightez/text_mining
general text mining and text manipulation with Python scripts
fomightez/pdbsum-binder
Demonstrating analysis of PDBsum-related data via active Jupyter sessions provided via MyBinder.org
fomightez/cl_demo-binder
A collection of demonstrations of useful resources for command line / Jupyter session manipulation of structure files.
fomightez/pyscript_test
All the cool people are trying pyscript.
fomightez/simulated_data
A repository for code that generates various simulated data.
fomightez/3Dscatter_plot_mod_playground-binder
Playground to test 3D scatter plot examples in modern JupyterLab and Jupyter Notebook via Binder
fomightez/bigdft-binder
binderized Bigdft stuff - see https://stackoverflow.com/a/78868235/8508004
fomightez/BPL_TEST2_Batch_calibration
Material for standard text book model of batch cultivation where model is calibrated using time series data for substrate and cell concentration. Updated.
fomightez/fomightez
fomightez/humap2-binder
Using data from hu.MAP 2.0 with the convenience of Python and Jupyter.
fomightez/humap3-binder
Using data from hu.MAP 3.0 with the convenience of Python and Jupyter.
fomightez/ipympl
Matplotlib Jupyter Integration
fomightez/jupyterlab-quickopen
Quickly open a file in JupyterLab by typing part of its name
fomightez/jupyterlite-demo
JupyterLite demo (ended up needed Xeus-Python flavor to do what I wanted)
fomightez/jupyterlite-xeus-demo
JupyterLite but with the Xeus-Python kernel so can pre-install packages, mainly at this time to demonstrate sidecar will work
fomightez/mobilechelonian
Turtles on a notebook with ipywidgets pinned to older
fomightez/msms_wrapper
Small python wrapper for the msms program (adapted slightly to work with MyBinder)
fomightez/network-visualisation
Fork of this repo to try locking in older Jupyter tech to restore ipysigma working in MyBinder launches.
fomightez/notebook-as-pdf
Save Jupyter Notebooks as PDF (My fork for testing works with MyBinder perhaps with Notebook 6)
fomightez/Parcels
Main code for Parcels (Probably A Really Computationally Efficient Lagrangian Simulator)
fomightez/pypowertrain-dash-binder
Electric powertrain characterisation and optimisation (Fork to fix Dash in Binder)
fomightez/ranked_list_comparison_demo
A notebook to demonstrate a function for comparing ranked lists.
fomightez/SICILIAN-binder
Fork of https://github.com/salzman-lab/SICILIAN made to work with MyBinder.org
fomightez/Unipressed-binder
Unipressed examples that run in MyBinder-based sessions to illustrate use of Unipressed to query Uniprot.
fomightez/voici-demotestMay24
Demo of Voici (Voila/JupyterLite) based on the demo repo as it existed in May 2024