jvanheld
Professor of Bioinformatics at Aix-Marseille Université; Co-director of the Institut Français de Bioinformatique (IFB), French node of ELIXIR
Aix-Marseille UniversitéMarseille, France
Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
bioinformatics_course
Support (slides, practicals) for bioinformatics courses by Jacques van Helden
cisreg_course
Course on the analysis of cis-regulatory elements from genomic sequences
IBIS_2024
Participation to the IBIS nebchmarking for motif discovery approaches
make_tutorial
SARS-CoV-2_origins
Analysis of insertions in the genomes and proteins of coronaviruses. Illustration: AvH. (2020). Covid-19 cracked <http://doi.org/10.5281/zenodo.3734643>
statistics-for-bioinformatics
Theory, methods and practicals for the statistical analysis of biological data.
stats4bioinfo
stats_avec_RStudio_EBA
Cours “Statistiques avec R" pour l'Ecole de Bioinformatique Aviesan
touret_sars-cov-2_inhibitors
Statistical analysis of Touret's in vitro screening for molecules inhibiting SARS-CoV-2 infection. Illustration: AvH. (2020). Covid-19 cracked (http://doi.org/10.5281/zenodo.3734643).
jvanheld's Repositories
jvanheld/SARS-CoV-2_origins
Analysis of insertions in the genomes and proteins of coronaviruses. Illustration: AvH. (2020). Covid-19 cracked <http://doi.org/10.5281/zenodo.3734643>
jvanheld/statistics-for-bioinformatics
Theory, methods and practicals for the statistical analysis of biological data.
jvanheld/cisreg_course
Course on the analysis of cis-regulatory elements from genomic sequences
jvanheld/stats4bioinfo
jvanheld/stats_avec_RStudio_EBA
Cours “Statistiques avec R" pour l'Ecole de Bioinformatique Aviesan
jvanheld/touret_sars-cov-2_inhibitors
Statistical analysis of Touret's in vitro screening for molecules inhibiting SARS-CoV-2 infection. Illustration: AvH. (2020). Covid-19 cracked (http://doi.org/10.5281/zenodo.3734643).
jvanheld/bioconda-recipes
Conda recipes for the bioconda channel.
jvanheld/bioinformatics_course
Support (slides, practicals) for bioinformatics courses by Jacques van Helden
jvanheld/make_tutorial
jvanheld/RSAT_Docker
Scripts for creating a Docker container with RSAT
jvanheld/shnc-origines-sars-cov-2
Cours Nature et Culture de la licence Sciences et Humanités, Aix-Marseille Université
jvanheld/IBIS_2024
Participation to the IBIS nebchmarking for motif discovery approaches
jvanheld/intro-bioinfo-L2-SV-AMU-SSV3U15_public
Cours d'introduciton à la bioinformatique, 2ème licence en Sciences de la vie, Aix-Marseille Université (L2 SV AMU)
jvanheld/LCG_BEII
Support for the course "Bioinformatica & Estadistica II", 2nd year Licenciatura en Ciencias Genomicas, UNAM, Cuernavaca.
jvanheld/shnc-opsines
Cours Nature & Culture 3 de la licence Sciences et Humanités d'Aix-Marseille Université
jvanheld/AdventOfCode
Python code for the AdventOfCode challenges
jvanheld/ASG
Analyse Statistique des données Génomiques
jvanheld/bh2018paris
BioHackathon event website
jvanheld/BioHackathon
Repository with information about the BioHackathon hosted in Paris in Nov 2018
jvanheld/cmb-comp-bio
Computational Biology course of the Master in Computational and Mathematical Biology
jvanheld/GREEKC
Shared code for the GREEKC training hackathon on interoperability between gene regulation databases/tools
jvanheld/Huanan_market_samples_JvH
Analysis of SARS-CoV-2 read counts versus metagenomic content for Huanan Seafood market sequencing data from Chinese CDC. Analysis built on top of Jesse Bloom's results.
jvanheld/motif_databases
Databases of transcription factor binding motifs for the software suite Regulatory Sequence Analysis Tools (RSAT)
jvanheld/NeAT_ghosts
files that used to be in the RSAT repository, but were only used by NeAT, which is not functional anymore
jvanheld/ng-cistrans-reg
jvanheld/rna-seq_replicate_analysis
Analysis of the RNA-seq transcriptome data with 48 biological replicates x 7 technical replicates produced by Geoff Barton's lab.
jvanheld/RNAseqMVA_old
Evaluation of multivariate analysis methods for the supervised classification of RNA-seq data
jvanheld/snakemake-rsat
some, tentative snakemake workflows developer by Bruno Contreras, Jaime Castro-Mondragon, Claire Rioualen and Jacques van Helden in 2016, not maintained since then.
jvanheld/stat1
Probabilités et statistiques pour la biologie - STAT1 - cours AMU SBBAU16L
jvanheld/using_IFB_NNCR
Tutorials for the use of IFB NNCR