Pinned Repositories
readfq
Fast multi-line FASTA/Q reader in several programming languages
bcb731
Defense Against the Dark Arts
biopython
Official git repository for Biopython (converted from CVS)
datahub
A centralized location for storing curated data ready for inclusion in cBioPortal.
fastqtk
FASTQ lightweight tools
fqtools
Tools for processing fastq files
fusioncatcher
Finder of Somatic Fusion Genes in RNA-seq data
MinHash
Example Python code for comparing documents using MinHash
readfq
Fast multi-line FASTA/Q reader in several programming languages
seqtk
Toolkit for processing sequences in FASTA/Q formats
ndaniel's Repositories
ndaniel/fusioncatcher
Finder of Somatic Fusion Genes in RNA-seq data
ndaniel/fastqtk
FASTQ lightweight tools
ndaniel/bcb731
Defense Against the Dark Arts
ndaniel/datahub
A centralized location for storing curated data ready for inclusion in cBioPortal.
ndaniel/readfq
Fast multi-line FASTA/Q reader in several programming languages
ndaniel/Spring
FASTQ compression
ndaniel/arriba
Fast and accurate gene fusion detection from RNA-Seq data
ndaniel/AutoTimer
ndaniel/back_to_sequences
ndaniel/BEETL
BEETL
ndaniel/BI-BE-CS-183-2023
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
ndaniel/bioconda-recipes
Conda recipes for the bioconda channel.
ndaniel/cudaMergeSort
Highly parallel, GPU-accelerated hybrid mergesort with mmap'd IO
ndaniel/Deep-Feature-Selection
Python (PyTorch) realization of Deep Feature Selection (Model, Algorithm)
ndaniel/FastqPuri
fastq quality assessment and filtering tool
ndaniel/fuzzion2
fuzzy fusion finder
ndaniel/HARC
Fastq compression
ndaniel/interactivenn
InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams
ndaniel/kaplanmeier
Create survival curves using kaplan-meier, the log-rank test.
ndaniel/lloyd-max-quantizer
Python implementation of Lloyd-Max quantizer.
ndaniel/MCML
ndaniel/partig
An experimental tool to estimate the similarity between all pairs of contigs
ndaniel/sanbomics_scripts
scripts and notebooks from sanbomics
ndaniel/scGeneFit-python
Python code for genetic marker selection using linear programming
ndaniel/scrna2019
supporting code for the multinomial single cell RNA-Seq paper
ndaniel/scRNA_cell_deconv_benchmark
Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data
ndaniel/sctransform
R package for modeling single cell UMI expression data using regularized negative binomial regression
ndaniel/sra-explorer
Web application to explore the Sequence Read Archive.
ndaniel/ssGSEApy
Implements in Python3 the ssGSEA method (Subramanian et al. PNAS 2005).
ndaniel/xCell
Cell types enrichment analysis