Pinned Repositories
readfq
Fast multi-line FASTA/Q reader in several programming languages
bcb731
Defense Against the Dark Arts
biopython
Official git repository for Biopython (converted from CVS)
datahub
A centralized location for storing curated data ready for inclusion in cBioPortal.
fastqtk
FASTQ lightweight tools
fqtools
Tools for processing fastq files
fusioncatcher
Finder of Somatic Fusion Genes in RNA-seq data
MinHash
Example Python code for comparing documents using MinHash
readfq
Fast multi-line FASTA/Q reader in several programming languages
seqtk
Toolkit for processing sequences in FASTA/Q formats
ndaniel's Repositories
ndaniel/fqtools
Tools for processing fastq files
ndaniel/MinHash
Example Python code for comparing documents using MinHash
ndaniel/seqtk
Toolkit for processing sequences in FASTA/Q formats
ndaniel/Blast2Bam
ndaniel/breakfast
Breakfast - a software for detecting genomic structural variants from DNA sequencing data
ndaniel/BUS_notebooks_python
ndaniel/codac
Comprehensive Detection and Analysis of Chimeras
ndaniel/contrastive
Contrastive PCA
ndaniel/Cookiecutter
ndaniel/D3_Reusable_Charts
ndaniel/fcseqtk
Fork of SeqTK adapted for FusionCatcher
ndaniel/FusionAnnotator
FusionAnnotator source code
ndaniel/FusionInspector
FusionInspector code
ndaniel/gmusicapi
An unofficial client library for Google Music.
ndaniel/gwsocket
fast, standalone, language-agnostic WebSocket server RFC6455 compliant
ndaniel/hcc-conda-recipes
Read-only copy of the HCC conda recipes repo.
ndaniel/JS_SDK_Sample
ndaniel/kallisto
Near optimal RNA-Seq quantification
ndaniel/Lunr.HTML.Scrape.Search
Test repo: Scrape HTML files, build a Lunr index, and search
ndaniel/mirnas
miRNAs testing
ndaniel/pizzly
Fast fusion detection using kallisto
ndaniel/PyGMNormalize
Python package for normalization of gene expression matrices.
ndaniel/salmon
Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments
ndaniel/showdown
A bidirectional Markdown to HTML to Markdown converter written in Javascript
ndaniel/sleuth_paper_analysis
Code to reproduce analyses from the sleuth paper
ndaniel/STAR
RNA-seq aligner
ndaniel/STAR-SEQR
RNA Fusion Detection and Quantification
ndaniel/trainAIMS
Functions to train AIMS' like models
ndaniel/vis
vis.js is a dynamic, browser-based visualization library
ndaniel/volkswagen
Volkswagen detects when your tests are being run in a CI server, and makes them pass.