mschubert
Bioinformatics at the Medical University of Innsbruck. Previously at the Netherlands Cancer Institute (NKI), PhD from EMBL-EBI/Cambridge Uni.
Innsbruck, AT
Pinned Repositories
clustermq
R package to send function calls as jobs on LSF, SGE, Slurm, PBS/Torque, or each via SSH
ebits
R bioinformatics toolkit incubator
narray
R package for subset- and name-aware array utility functions
PKGBUILDs
Build scripts for the Archlinux User Repository
python-obo
Python parser and network representation of Open Biological and Biomedical Ontologies (OBO)
TCGAbiolinks-downloader
GNU Make-driven workflow to download TCGA data via the TCGAbiolinks package
footprints
Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"
progeny
R package for Pathway RespOnsive GENe activity inference
mschubert's Repositories
mschubert/clustermq
R package to send function calls as jobs on LSF, SGE, Slurm, PBS/Torque, or each via SSH
mschubert/narray
R package for subset- and name-aware array utility functions
mschubert/TCGAbiolinks-downloader
GNU Make-driven workflow to download TCGA data via the TCGAbiolinks package
mschubert/ebits
R bioinformatics toolkit incubator
mschubert/cgas_ko
mschubert/PKGBUILDs
Build scripts for the Archlinux User Repository
mschubert/R-hpc
mschubert/GRN-aneup-purity
Analysis code for "Gene networks in cancer are biased by aneuploidies and sample impurities"
mschubert/overlay
Gentoo overlay for (mainly scientific) software that's not quite ready for the main tree
mschubert/pepitope
mschubert/ToxicGenes
mschubert/Aneufinder2
Find CNVs in single cell sequencing data.
mschubert/clustermq-performance
Performance testing for https://github.com/mschubert/clustermq
mschubert/cppzmq
Header-only C++ binding for libzmq
mschubert/data
A data API for molecular biology
mschubert/deepTools
Tools to process and analyze deep sequencing data.
mschubert/docker-actions-test
mschubert/GENIE3
GENIE3 (GEne Network Inference with Ensemble of trees) R-package
mschubert/gentoo_prefix_ci
A Gentoo Prefix continuous integration repo. Find precompiled Gentoo Prefix in the releases section
mschubert/HoneyBADGER
HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
mschubert/mad2-transposon
Analysis code for "Cancer tolerance to chromosomal instability is driven by Stat1 inactivation in vivo"
mschubert/mcp
Regression with Multiple Change Points
mschubert/mschubert
mschubert/mschubert.github.io
mschubert/ProjecTILs
Interpretation of T cell states using reference single-cell atlases
mschubert/rzmq
R package for ZMQ
mschubert/sci
[MIRROR] Gentoo Science Overlay
mschubert/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
mschubert/tigress
Trustful Inference of Gene REgulation using Stability Selection
mschubert/VariantAnnotation
Annotation of Genetic Variants