mschubert/clustermq

Issues

• Common data sending may be fully parallel

  #334 opened 3 months ago by mschubert
  0

• Accidental data sending via closures

  #333 opened 3 months ago by mschubert
  0

• `[.data.table`(i) subsets columns instead of rows when called via `foreach`

  #330 opened 4 months ago by neovom
  4

• Outdated ZeroMQ on system trumps bundled version(?)

  #327 opened 4 months ago by HenrikBengtsson
  3

• clustermq jobs stall when using Seurat::ScaleData

  #332 opened 5 months ago by nick-youngblut
  9

• seurat v5 => Error in [[<-.data.frame(*tmp*, field, value = new("Seurat", assays = list(: replacement has 5000 rows, data has 1

  #331 opened 6 months ago by nick-youngblut
  2

• Specify ports used by zeromq

  #328 opened 9 months ago by dankessler
  2

• clustermq 0.9.3 worker stats NA?

  #325 opened 10 months ago by luwidmer
  3

• Error in qsys$cleanup() : argument "success" is missing, with no default

  #326 opened 10 months ago by weizhu365
  2

• 0.9.0+ crashing on AWS parallel cluster with slurm & several hundred cores

  #324 opened a year ago by kkmann
  6

• Cleanup issues

  #323 opened a year ago by mschubert
  0

• cannot customize ports in ssh options

  #296 opened a year ago by weizhu365
  4

• Clustermq 0.8.96 fails with error on `foreach ... %dopar% ...` in Jupyter lab R console/notebooks

  #271 opened a year ago by efremale
  2

• Trouble using clustermq as the backend for BiocParallel

  #302 opened a year ago by bhayete-empress
  6

• Repeatedly calling Q() in clustermq 0.9.0 leads to "job not found" messages

  #307 opened a year ago by luwidmer
  6

• jobs won't run from R Jupyter notebooks in VS Code, for SGE

  #319 opened a year ago by atyakhtmpg
  3

• recv() hangs on Mac OS

  #321 opened a year ago by wlandau
  3

• `max_calls_worker` argument is not functional

  #322 opened a year ago by mschubert
  0

• Memory options missing from SGE template

  #298 opened 2 years ago by nickholway
  3

• Running multiple jobs on SLURM scheduler through SSH

  #320 opened a year ago by wardfont
  3

• Can't register backend after upgrading to 0.9.0

  #309 opened a year ago by bhayete-empress
  3

• new feature making clustermq "pipeable"

  #318 opened a year ago by wds15
  4

• clustermq was removed from CRAN?

  #317 opened a year ago by luwidmer
  3

• Simple receive hangs on macOS

  #311 opened a year ago by mschubert
  23

• Receiving data after shutting down workers results in a segfault

  #306 opened a year ago by wlandau
  9

• Q() segfaults on Windows & Linux with multiprocess scheduler with clustermq 0.9.0

  #308 opened a year ago by luwidmer
  8

• Error in w$poll() : Unexpected peer disconnect

  #310 opened a year ago by raphaelbetschart
  4

• `v0.9.0` backwards compatibility

  #303 opened a year ago by mschubert
  14

• Local processing reports errors only after all calls complete

  #305 opened a year ago by mschubert
  1

• Error/warning summary does not prioritize correctly

  #304 opened a year ago by mschubert
  0

• (develop) torque/PBS- In worker cleanup, seems to be sending job names instead of PBS ids (Apparent regression of #186)

  #265 opened 2 years ago by strazto
  4

• `max_calls_worker` may provide insufficient slots to finish jobs

  #258 opened 2 years ago by mschubert
  0

• Is it confusing to call ssh a clustermq scheduler?

  #273 opened 2 years ago by mattwarkentin
  0

• common data warning message

  #287 opened 2 years ago by wlandau
  0

• Job port is set to NA after binding failure

  #270 opened 2 years ago by statquant
  11

• Expose run time as an option whilst submitting a function

  #297 opened 2 years ago by nickholway
  3

• Segfault with purrr 1.0.0

  #295 opened 2 years ago by wlandau
  2

• More user friendly timeouts

  #293 opened 2 years ago by multimeric
  1

• SGE submission fails due to invalid parallel environment in default template

  #288 opened 2 years ago by nickholway
  7

• SGE template: defaulting to user R path?

  #277 opened 2 years ago by nick-youngblut
  7

• Nonstandard R path via SSH

  #281 opened 3 years ago by mschubert
  3

• some progress with future.clustermq

  #282 opened 3 years ago by michaelmayer2
  2

• targets stalls using the worker API with the multiprocess backend

  #278 opened 3 years ago by mschubert
  1

• Question about the R session on the worker

  #276 opened 3 years ago by ImNotaGit
  2

• (develop) : submodules not pulled in configure

  #263 opened 3 years ago by strazto
  0

• Q_rows fails with log_worker=F

  #272 opened 3 years ago by dleopold
  2

• Warning in sprintf(log_file, i): one argument not used by format '|'

  #269 opened 3 years ago by wlandau
  3

• Expected PROXY_READY, recieve 'PROXY_ERROR: no file found'

  #267 opened 4 years ago by Aariq
  2

• Using a Singularity Container as Environment for Simulations

  #260 opened 4 years ago by nilsbeyer
  6

• SLURM starts jobs, but they don't finish

  #259 opened 4 years ago by mhesselbarth
  5