mattwarkentin
Cancer Epidemiologist - PhD in Molecular Epidemiology
University of CalgaryCalgary, Alberta, Canada
Pinned Repositories
ALARM
Asian Lung Cancer Absolute Risk Models (ALARM) for lung cancer mortality.
CAIC-RT
Online tool capable of estimating the maximum daily number of incident COVID-19 cases manageable by healthcare systems.
fidelius
Password Protected HTML Documents
halo
R package for connecting to the Halo Infinite API
INTEGRAL-Radiomics
INTEGRAL-Radiomics model for assessing screen-detected pulmonary nodules. Warkentin MT et al. Thorax 2024.
openmpp
Programmatic interface to the OpenM++ microsimulation platform
ordered
Bindings for ordinal classification models for use with the 'parsnip' package, such as ordinal random forests by Hornung R. (2020) <doi:10.1007/s00357-018-9302-x> and others.
R6methods
Enriched S3 generic support for R6 class objects
targets-demo
Reproducible and scalable data analysis workflows with targets
torontodown
University of Toronto thesis using R Markdown and bookdown
mattwarkentin's Repositories
mattwarkentin/fidelius
Password Protected HTML Documents
mattwarkentin/ordered
Bindings for ordinal classification models for use with the 'parsnip' package, such as ordinal random forests by Hornung R. (2020) <doi:10.1007/s00357-018-9302-x> and others.
mattwarkentin/halo
R package for connecting to the Halo Infinite API
mattwarkentin/openmpp
Programmatic interface to the OpenM++ microsimulation platform
mattwarkentin/torontodown
University of Toronto thesis using R Markdown and bookdown
mattwarkentin/INTEGRAL-Radiomics
INTEGRAL-Radiomics model for assessing screen-detected pulmonary nodules. Warkentin MT et al. Thorax 2024.
mattwarkentin/ALARM
Asian Lung Cancer Absolute Risk Models (ALARM) for lung cancer mortality.
mattwarkentin/actions
GitHub Actions for the R community
mattwarkentin/censored
Parsnip wrappers for survival models
mattwarkentin/desirability2
Desirability Functions for Multiparameter Optimization
mattwarkentin/dials
Tools for creating tuning parameter values
mattwarkentin/fastmap
Fast map implementation for R
mattwarkentin/flexsurv-dev
The flexsurv R package for flexible parametric survival and multi-state modelling
mattwarkentin/IMA2024_ROpenMpp_Workshop
Materials for the R/OpenM++ workshop at the 2024 IMA World Congress
mattwarkentin/marginaleffects
R package to compute and plot predictions, slopes, marginal means, and comparisons (contrasts, risk ratios, odds, etc.) for over 80 classes of statistical models. Conduct linear and non-linear hypothesis tests, or equivalence tests. Calculate uncertainty estimates using the delta method, bootstrapping, or simulation-based inference.
mattwarkentin/namedropR
R package namedropR
mattwarkentin/pandoc-filters
Miscellaneous set of Pandoc filters
mattwarkentin/parsnip
A tidy unified interface to models
mattwarkentin/poissonreg
parsnip wrappers for Poisson regression
mattwarkentin/ptl-presentation
Campbell Lab presentation on PyTorch Lightning API
mattwarkentin/ptl-template
Project template for PyTorch Lightning
mattwarkentin/quarto-cv
Simple curriculum vitae format extension for Quarto
mattwarkentin/rsample
Classes and functions to create and summarize resampling objects
mattwarkentin/rweekly.org
R Weekly
mattwarkentin/targets-presentation
Presentation to introduce and demonstrate the targets package for R
mattwarkentin/torchio
TorchIO: medical imaging for deep learning.
mattwarkentin/tune
Tools for tidy parameter tuning
mattwarkentin/xaringanExtra
:ferris_wheel: A playground of enhancements and extensions for xaringan slides.
mattwarkentin/yardstick
Tidy methods for measuring model performance
mattwarkentin/zsh-config
Configuration recipe for zsh on Mac OS