Pinned Repositories
2022_manatee_paper_analyses
Code implementing MANATEE used for the analyses in the associated paper.
active-learning-benchmarking
astir
astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
astir-manuscript
Analysis code for "Automated assignment of cell identity from single-cellmultiplexed imaging and proteomic data"
Astir-Vignette
beyond_benchmarking_analyses
cancersea
a simple R data package for curated cancer pathway-specific gene lists
inferorg
inferorg: automatic inference and conversion of gene ID formats across organisms
leader
starling
Segmentation error aware clustering for multiplexed imaging
Campbell Lab Toronto's Repositories
camlab-bioml/astir
astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
camlab-bioml/starling
Segmentation error aware clustering for multiplexed imaging
camlab-bioml/cancersea
a simple R data package for curated cancer pathway-specific gene lists
camlab-bioml/beyond_benchmarking_analyses
camlab-bioml/2022_manatee_paper_analyses
Code implementing MANATEE used for the analyses in the associated paper.
camlab-bioml/active-learning-benchmarking
camlab-bioml/Astir-Vignette
camlab-bioml/leader
camlab-bioml/2021_SCVAR
camlab-bioml/acdc
Bug fixed version of acdc
camlab-bioml/astir-manuscript
Analysis code for "Automated assignment of cell identity from single-cellmultiplexed imaging and proteomic data"
camlab-bioml/inferorg
inferorg: automatic inference and conversion of gene ID formats across organisms
camlab-bioml/margo
Generates cell type marker which could be used for astir classification.
camlab-bioml/schapiro-2017
Pipeline to process tiff files + masks from Schapiro 2017 https://pubmed.ncbi.nlm.nih.gov/28783155/
camlab-bioml/ACB_I_II
camlab-bioml/AstirRuntime
camlab-bioml/scvi-tools-skeleton
Template repository for creating novel models with scvi-tools
camlab-bioml/taproom
taproom: Tools for spAtial PROteOmics | 🍻 🖥
camlab-bioml/VAE-project-JH
camlab-bioml/2024-histopathTLO-Yuxi
camlab-bioml/active-learning-benchmarking-archive
camlab-bioml/HEB_RNASeq
camlab-bioml/infercnv-snakemake
camlab-bioml/PDAC_cellular_niche_analyses
Code implementing the analysis workflow and the probabilistic model for decoding multicellular niches in PDAC
camlab-bioml/visium_preprocessing